Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27085

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27080 and BPHYT_RS27085 are separated by 116 nucleotidesBPHYT_RS27085 and BPHYT_RS27090 are separated by 79 nucleotides BPHYT_RS27080: BPHYT_RS27080 - AraC family transcriptional regulator, at 1,648,507 to 1,649,478 _RS27080 BPHYT_RS27085: BPHYT_RS27085 - alkylhydroperoxidase, at 1,649,595 to 1,649,948 _RS27085 BPHYT_RS27090: BPHYT_RS27090 - aldo/keto reductase, at 1,650,028 to 1,651,080 _RS27090 Position (kb) 1649 1650Strain fitness (log2 ratio) -1 0 1at 1649.472 kb on + strandat 1649.472 kb on + strandat 1649.539 kb on + strandat 1649.539 kb on + strandat 1649.539 kb on + strandat 1649.787 kb on - strand, within BPHYT_RS27085at 1649.947 kb on - strandat 1649.975 kb on + strandat 1649.989 kb on + strandat 1650.323 kb on + strand, within BPHYT_RS27090at 1650.401 kb on + strand, within BPHYT_RS27090at 1650.402 kb on - strand, within BPHYT_RS27090at 1650.515 kb on + strand, within BPHYT_RS27090

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,649,472 + -0.3
1,649,472 + -1.5
1,649,539 + +0.1
1,649,539 + +0.2
1,649,539 + -0.4
1,649,787 - BPHYT_RS27085 0.54 -1.7
1,649,947 - +0.2
1,649,975 + -0.1
1,649,989 + -0.1
1,650,323 + BPHYT_RS27090 0.28 +1.2
1,650,401 + BPHYT_RS27090 0.35 -1.6
1,650,402 - BPHYT_RS27090 0.36 +0.7
1,650,515 + BPHYT_RS27090 0.46 -0.0

Or see this region's nucleotide sequence