Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26090

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26085 and BPHYT_RS26090 are separated by 209 nucleotidesBPHYT_RS26090 and BPHYT_RS26095 overlap by 4 nucleotides BPHYT_RS26085: BPHYT_RS26085 - ABC transporter substrate-binding protein, at 1,427,930 to 1,428,907 _RS26085 BPHYT_RS26090: BPHYT_RS26090 - isochorismatase hydrolase, at 1,429,117 to 1,429,917 _RS26090 BPHYT_RS26095: BPHYT_RS26095 - amidase, at 1,429,914 to 1,431,113 _RS26095 Position (kb) 1429 1430Strain fitness (log2 ratio) -1 0 1at 1428.181 kb on - strand, within BPHYT_RS26085at 1428.334 kb on - strand, within BPHYT_RS26085at 1428.433 kb on - strand, within BPHYT_RS26085at 1429.502 kb on - strand, within BPHYT_RS26090at 1430.809 kb on + strand, within BPHYT_RS26095

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,428,181 - BPHYT_RS26085 0.26 +0.8
1,428,334 - BPHYT_RS26085 0.41 -0.6
1,428,433 - BPHYT_RS26085 0.51 +1.1
1,429,502 - BPHYT_RS26090 0.48 +0.1
1,430,809 + BPHYT_RS26095 0.75 +1.1

Or see this region's nucleotide sequence