Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24570 and BPHYT_RS24575 are separated by 17 nucleotides BPHYT_RS24575 and BPHYT_RS24580 are separated by 3 nucleotides BPHYT_RS24580 and BPHYT_RS24585 are separated by 222 nucleotides BPHYT_RS24585 and BPHYT_RS24590 are separated by 116 nucleotides
BPHYT_RS24570: BPHYT_RS24570 - membrane protein, at 1,082,890 to 1,084,050
_RS24570
BPHYT_RS24575: BPHYT_RS24575 - hypothetical protein, at 1,084,068 to 1,084,268
_RS24575
BPHYT_RS24580: BPHYT_RS24580 - hypothetical protein, at 1,084,272 to 1,084,601
_RS24580
BPHYT_RS24585: BPHYT_RS24585 - NUDIX hydrolase, at 1,084,824 to 1,085,411
_RS24585
BPHYT_RS24590: BPHYT_RS24590 - DeoR faimly transcriptional regulator, at 1,085,528 to 1,086,289
_RS24590
Position (kb) 1084
1085
1086 Strain fitness (log2 ratio) -1
0
1 at 1083.883 kb on + strand, within BPHYT_RS24570 at 1084.202 kb on + strand, within BPHYT_RS24575 at 1084.242 kb on - strand at 1084.359 kb on - strand, within BPHYT_RS24580 at 1084.737 kb on - strand at 1084.742 kb on + strand at 1084.999 kb on + strand, within BPHYT_RS24585 at 1086.098 kb on + strand, within BPHYT_RS24590 at 1086.236 kb on - strand at 1086.333 kb on + strand at 1086.333 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 1,083,883 + BPHYT_RS24570 0.86 -0.1 1,084,202 + BPHYT_RS24575 0.67 -0.5 1,084,242 - +0.1 1,084,359 - BPHYT_RS24580 0.26 +1.1 1,084,737 - -0.5 1,084,742 + -0.0 1,084,999 + BPHYT_RS24585 0.30 +0.8 1,086,098 + BPHYT_RS24590 0.75 +0.3 1,086,236 - -0.5 1,086,333 + +0.1 1,086,333 + -0.6
Or see this region's nucleotide sequence