Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15690

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS15680 and BPHYT_RS15685 overlap by 1 nucleotidesBPHYT_RS15685 and BPHYT_RS15690 are separated by 111 nucleotidesBPHYT_RS15690 and BPHYT_RS15695 are separated by 75 nucleotides BPHYT_RS15680: BPHYT_RS15680 - isoleucine--tRNA ligase, at 3,555,664 to 3,558,501 _RS15680 BPHYT_RS15685: BPHYT_RS15685 - lipoprotein signal peptidase, at 3,558,501 to 3,559,019 _RS15685 BPHYT_RS15690: BPHYT_RS15690 - phosphopantothenate synthase, at 3,559,131 to 3,560,345 _RS15690 BPHYT_RS15695: BPHYT_RS15695 - luciferase, at 3,560,421 to 3,561,440 _RS15695 Position (kb) 3559 3560 3561Strain fitness (log2 ratio) -1 0 1 2 3at 3558.499 kb on + strandat 3559.058 kb on + strandat 3559.058 kb on + strandat 3560.415 kb on - strandat 3560.664 kb on + strand, within BPHYT_RS15695at 3560.665 kb on - strand, within BPHYT_RS15695at 3560.693 kb on + strand, within BPHYT_RS15695at 3560.693 kb on + strand, within BPHYT_RS15695at 3560.694 kb on - strand, within BPHYT_RS15695at 3560.794 kb on - strand, within BPHYT_RS15695at 3560.794 kb on - strand, within BPHYT_RS15695at 3560.845 kb on + strand, within BPHYT_RS15695at 3561.075 kb on + strand, within BPHYT_RS15695

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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3,558,499 + +3.7
3,559,058 + -0.0
3,559,058 + +0.4
3,560,415 - -0.5
3,560,664 + BPHYT_RS15695 0.24 +1.3
3,560,665 - BPHYT_RS15695 0.24 -0.7
3,560,693 + BPHYT_RS15695 0.27 +1.2
3,560,693 + BPHYT_RS15695 0.27 -1.7
3,560,694 - BPHYT_RS15695 0.27 +1.2
3,560,794 - BPHYT_RS15695 0.37 +0.2
3,560,794 - BPHYT_RS15695 0.37 -0.4
3,560,845 + BPHYT_RS15695 0.42 -0.1
3,561,075 + BPHYT_RS15695 0.64 -0.1

Or see this region's nucleotide sequence