Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS11695 and BPHYT_RS11700 are separated by 247 nucleotides BPHYT_RS11700 and BPHYT_RS11705 are separated by 220 nucleotides BPHYT_RS11705 and BPHYT_RS11710 are separated by 230 nucleotides
BPHYT_RS11695: BPHYT_RS11695 - hypothetical protein, at 2,652,774 to 2,653,061
_RS11695
BPHYT_RS11700: BPHYT_RS11700 - hypothetical protein, at 2,653,309 to 2,653,581
_RS11700
BPHYT_RS11705: BPHYT_RS11705 - hypothetical protein, at 2,653,802 to 2,654,521
_RS11705
BPHYT_RS11710: BPHYT_RS11710 - diguanylate cyclase, at 2,654,752 to 2,656,233
_RS11710
Position (kb)
2653
2654
2655 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2653.220 kb on - strand at 2653.225 kb on - strand at 2653.225 kb on - strand at 2653.770 kb on - strand at 2654.350 kb on + strand, within BPHYT_RS11705 at 2654.351 kb on - strand, within BPHYT_RS11705 at 2655.002 kb on - strand, within BPHYT_RS11710 at 2655.058 kb on - strand at 2655.114 kb on - strand, within BPHYT_RS11710 at 2655.386 kb on + strand, within BPHYT_RS11710 at 2655.438 kb on - strand, within BPHYT_RS11710 at 2655.438 kb on - strand, within BPHYT_RS11710
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 2,653,220 - +0.2 2,653,225 - +0.8 2,653,225 - +0.7 2,653,770 - -0.0 2,654,350 + BPHYT_RS11705 0.76 +0.4 2,654,351 - BPHYT_RS11705 0.76 -1.6 2,655,002 - BPHYT_RS11710 0.17 +0.2 2,655,058 - +4.0 2,655,114 - BPHYT_RS11710 0.24 -0.8 2,655,386 + BPHYT_RS11710 0.43 +0.5 2,655,438 - BPHYT_RS11710 0.46 +0.1 2,655,438 - BPHYT_RS11710 0.46 -0.1
Or see this region's nucleotide sequence