Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08395

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS08390 and BPHYT_RS08395 are separated by 12 nucleotidesBPHYT_RS08395 and BPHYT_RS08400 are separated by 684 nucleotides BPHYT_RS08390: BPHYT_RS08390 - DSBA oxidoreductase, at 1,922,753 to 1,923,829 _RS08390 BPHYT_RS08395: BPHYT_RS08395 - DSBA oxidoreductase, at 1,923,842 to 1,925,467 _RS08395 BPHYT_RS08400: BPHYT_RS08400 - hypothetical protein, at 1,926,152 to 1,926,703 _RS08400 Position (kb) 1923 1924 1925 1926Strain fitness (log2 ratio) -2 -1 0 1 2at 1923.602 kb on + strand, within BPHYT_RS08390at 1923.743 kb on + strandat 1923.745 kb on + strandat 1923.745 kb on + strandat 1924.485 kb on + strand, within BPHYT_RS08395at 1924.959 kb on - strand, within BPHYT_RS08395at 1925.345 kb on + strandat 1925.580 kb on + strandat 1925.653 kb on - strandat 1925.782 kb on + strandat 1925.859 kb on + strandat 1925.859 kb on + strandat 1926.031 kb on - strandat 1926.104 kb on - strandat 1926.404 kb on - strand, within BPHYT_RS08400at 1926.431 kb on - strand, within BPHYT_RS08400

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,923,602 + BPHYT_RS08390 0.79 +0.1
1,923,743 + -0.7
1,923,745 + -0.1
1,923,745 + +0.3
1,924,485 + BPHYT_RS08395 0.40 +0.0
1,924,959 - BPHYT_RS08395 0.69 +2.0
1,925,345 + -0.0
1,925,580 + +1.1
1,925,653 - -2.7
1,925,782 + +0.2
1,925,859 + -0.5
1,925,859 + -0.2
1,926,031 - +0.5
1,926,104 - -0.5
1,926,404 - BPHYT_RS08400 0.46 -0.3
1,926,431 - BPHYT_RS08400 0.51 -0.1

Or see this region's nucleotide sequence