Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04060

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04055 and BPHYT_RS04060 overlap by 1 nucleotidesBPHYT_RS04060 and BPHYT_RS04065 are separated by 59 nucleotides BPHYT_RS04055: BPHYT_RS04055 - PST family polysaccharide export protein, at 925,236 to 926,489 _RS04055 BPHYT_RS04060: BPHYT_RS04060 - glycosyl transferase, at 926,489 to 927,562 _RS04060 BPHYT_RS04065: BPHYT_RS04065 - hypothetical protein, at 927,622 to 928,833 _RS04065 Position (kb) 926 927 928Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 925.659 kb on + strand, within BPHYT_RS04055at 925.660 kb on - strand, within BPHYT_RS04055at 925.663 kb on - strand, within BPHYT_RS04055at 925.755 kb on + strand, within BPHYT_RS04055at 925.996 kb on - strand, within BPHYT_RS04055at 926.127 kb on + strand, within BPHYT_RS04055at 926.458 kb on + strandat 926.813 kb on + strand, within BPHYT_RS04060at 927.116 kb on + strand, within BPHYT_RS04060at 927.117 kb on - strand, within BPHYT_RS04060at 927.144 kb on - strand, within BPHYT_RS04060at 927.646 kb on + strandat 927.646 kb on + strandat 927.646 kb on + strandat 927.647 kb on - strandat 927.804 kb on + strand, within BPHYT_RS04065at 927.804 kb on + strand, within BPHYT_RS04065at 927.805 kb on - strand, within BPHYT_RS04065at 928.475 kb on + strand, within BPHYT_RS04065

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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925,659 + BPHYT_RS04055 0.34 +0.7
925,660 - BPHYT_RS04055 0.34 -0.1
925,663 - BPHYT_RS04055 0.34 -0.0
925,755 + BPHYT_RS04055 0.41 -0.7
925,996 - BPHYT_RS04055 0.61 +0.0
926,127 + BPHYT_RS04055 0.71 +0.5
926,458 + -0.7
926,813 + BPHYT_RS04060 0.30 +0.5
927,116 + BPHYT_RS04060 0.58 +2.8
927,117 - BPHYT_RS04060 0.58 +0.9
927,144 - BPHYT_RS04060 0.61 -2.9
927,646 + -0.1
927,646 + +1.1
927,646 + -0.1
927,647 - +1.2
927,804 + BPHYT_RS04065 0.15 -0.7
927,804 + BPHYT_RS04065 0.15 +1.7
927,805 - BPHYT_RS04065 0.15 -0.0
928,475 + BPHYT_RS04065 0.70 +0.7

Or see this region's nucleotide sequence