Experiment: Tetracycline 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4184 and Ac3H11_4185 are separated by 147 nucleotides Ac3H11_4185 and Ac3H11_4186 are separated by 39 nucleotides Ac3H11_4186 and Ac3H11_4187 are separated by 125 nucleotides
Ac3H11_4184 - Aldehyde dehydrogenase B (EC 1.2.1.22), at 441,129 to 442,625
_4184
Ac3H11_4185 - hypothetical protein, at 442,773 to 443,051
_4185
Ac3H11_4186 - putative membrane protein, at 443,091 to 444,284
_4186
Ac3H11_4187 - Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1), at 444,410 to 445,378
_4187
Position (kb) 443
444
445 Strain fitness (log2 ratio) -2
-1
0
1
2 at 442.410 kb on + strand, within Ac3H11_4184 at 442.410 kb on + strand, within Ac3H11_4184 at 442.410 kb on + strand, within Ac3H11_4184 at 442.410 kb on + strand, within Ac3H11_4184 at 442.411 kb on - strand, within Ac3H11_4184 at 442.411 kb on - strand, within Ac3H11_4184 at 442.411 kb on - strand, within Ac3H11_4184 at 442.411 kb on - strand, within Ac3H11_4184 at 442.411 kb on - strand, within Ac3H11_4184 at 442.416 kb on + strand, within Ac3H11_4184 at 442.416 kb on + strand, within Ac3H11_4184 at 442.417 kb on - strand, within Ac3H11_4184 at 442.417 kb on - strand, within Ac3H11_4184 at 442.575 kb on + strand at 442.575 kb on + strand at 442.575 kb on + strand at 442.575 kb on + strand at 442.576 kb on - strand at 442.590 kb on + strand at 442.590 kb on + strand at 442.590 kb on + strand at 442.590 kb on + strand at 442.591 kb on - strand at 442.591 kb on - strand at 442.624 kb on - strand at 442.624 kb on - strand at 442.624 kb on - strand at 442.709 kb on + strand at 442.709 kb on + strand at 442.710 kb on - strand at 442.774 kb on + strand at 442.774 kb on + strand at 442.775 kb on - strand at 442.775 kb on - strand at 442.786 kb on + strand at 442.957 kb on + strand, within Ac3H11_4185 at 442.987 kb on - strand, within Ac3H11_4185 at 443.102 kb on + strand at 443.103 kb on - strand at 443.148 kb on + strand at 443.608 kb on + strand, within Ac3H11_4186 at 443.608 kb on + strand, within Ac3H11_4186 at 443.609 kb on - strand, within Ac3H11_4186 at 443.609 kb on - strand, within Ac3H11_4186 at 443.609 kb on - strand, within Ac3H11_4186 at 443.609 kb on - strand, within Ac3H11_4186 at 443.609 kb on - strand, within Ac3H11_4186 at 443.779 kb on + strand, within Ac3H11_4186 at 443.779 kb on + strand, within Ac3H11_4186 at 443.779 kb on + strand, within Ac3H11_4186 at 443.779 kb on + strand, within Ac3H11_4186 at 444.026 kb on + strand, within Ac3H11_4186 at 444.026 kb on + strand, within Ac3H11_4186 at 444.026 kb on + strand, within Ac3H11_4186 at 444.026 kb on + strand, within Ac3H11_4186 at 444.027 kb on - strand, within Ac3H11_4186 at 444.027 kb on - strand, within Ac3H11_4186 at 444.028 kb on + strand, within Ac3H11_4186 at 444.029 kb on - strand, within Ac3H11_4186 at 444.116 kb on - strand, within Ac3H11_4186 at 444.299 kb on + strand at 444.325 kb on + strand at 444.326 kb on - strand at 444.340 kb on - strand at 444.492 kb on + strand at 444.492 kb on + strand at 444.492 kb on + strand at 444.492 kb on + strand at 444.493 kb on - strand at 444.507 kb on + strand, within Ac3H11_4187 at 444.567 kb on + strand, within Ac3H11_4187 at 444.568 kb on - strand, within Ac3H11_4187 at 444.568 kb on - strand, within Ac3H11_4187 at 444.568 kb on - strand, within Ac3H11_4187 at 444.568 kb on - strand, within Ac3H11_4187 at 444.609 kb on + strand, within Ac3H11_4187 at 444.609 kb on + strand, within Ac3H11_4187 at 444.609 kb on + strand, within Ac3H11_4187 at 444.609 kb on + strand, within Ac3H11_4187 at 444.610 kb on - strand, within Ac3H11_4187 at 444.610 kb on - strand, within Ac3H11_4187 at 444.610 kb on - strand, within Ac3H11_4187 at 444.610 kb on - strand, within Ac3H11_4187 at 444.610 kb on - strand, within Ac3H11_4187 at 444.753 kb on + strand, within Ac3H11_4187 at 444.754 kb on - strand, within Ac3H11_4187 at 444.864 kb on + strand, within Ac3H11_4187 at 444.864 kb on + strand, within Ac3H11_4187 at 444.864 kb on + strand, within Ac3H11_4187 at 444.864 kb on + strand, within Ac3H11_4187 at 444.865 kb on - strand, within Ac3H11_4187 at 444.966 kb on + strand, within Ac3H11_4187 at 444.966 kb on + strand, within Ac3H11_4187 at 444.966 kb on + strand, within Ac3H11_4187 at 444.966 kb on + strand, within Ac3H11_4187 at 444.966 kb on + strand, within Ac3H11_4187 at 444.966 kb on + strand, within Ac3H11_4187 at 444.966 kb on + strand, within Ac3H11_4187 at 444.966 kb on + strand, within Ac3H11_4187 at 444.966 kb on + strand, within Ac3H11_4187 at 444.966 kb on + strand, within Ac3H11_4187 at 444.966 kb on + strand, within Ac3H11_4187 at 444.966 kb on + strand, within Ac3H11_4187 at 444.966 kb on + strand, within Ac3H11_4187 at 444.966 kb on + strand, within Ac3H11_4187 at 444.967 kb on - strand, within Ac3H11_4187 at 444.967 kb on - strand, within Ac3H11_4187 at 444.967 kb on - strand, within Ac3H11_4187 at 444.967 kb on - strand, within Ac3H11_4187 at 444.967 kb on - strand, within Ac3H11_4187 at 444.967 kb on - strand, within Ac3H11_4187 at 444.967 kb on - strand, within Ac3H11_4187 at 444.967 kb on - strand, within Ac3H11_4187 at 444.967 kb on - strand, within Ac3H11_4187 at 444.967 kb on - strand, within Ac3H11_4187 at 444.967 kb on - strand, within Ac3H11_4187 at 445.021 kb on - strand, within Ac3H11_4187 at 445.021 kb on - strand, within Ac3H11_4187 at 445.168 kb on - strand, within Ac3H11_4187
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.00005 mg/ml remove 442,410 + Ac3H11_4184 0.86 -0.8 442,410 + Ac3H11_4184 0.86 -0.4 442,410 + Ac3H11_4184 0.86 -0.9 442,410 + Ac3H11_4184 0.86 -0.6 442,411 - Ac3H11_4184 0.86 -0.2 442,411 - Ac3H11_4184 0.86 -0.6 442,411 - Ac3H11_4184 0.86 +1.3 442,411 - Ac3H11_4184 0.86 -0.1 442,411 - Ac3H11_4184 0.86 +1.5 442,416 + Ac3H11_4184 0.86 -0.5 442,416 + Ac3H11_4184 0.86 -0.8 442,417 - Ac3H11_4184 0.86 +0.3 442,417 - Ac3H11_4184 0.86 +0.6 442,575 + +1.2 442,575 + -0.3 442,575 + +0.5 442,575 + +0.2 442,576 - -0.7 442,590 + +0.3 442,590 + +0.1 442,590 + -0.1 442,590 + +0.4 442,591 - +0.7 442,591 - +0.1 442,624 - -0.3 442,624 - +0.3 442,624 - -1.0 442,709 + +0.4 442,709 + -0.7 442,710 - -0.6 442,774 + -1.0 442,774 + -0.1 442,775 - +0.5 442,775 - +0.2 442,786 + +0.5 442,957 + Ac3H11_4185 0.66 +0.2 442,987 - Ac3H11_4185 0.77 +1.6 443,102 + +0.9 443,103 - -0.6 443,148 + -1.0 443,608 + Ac3H11_4186 0.43 +0.2 443,608 + Ac3H11_4186 0.43 +0.5 443,609 - Ac3H11_4186 0.43 +0.6 443,609 - Ac3H11_4186 0.43 +0.3 443,609 - Ac3H11_4186 0.43 +0.3 443,609 - Ac3H11_4186 0.43 +1.8 443,609 - Ac3H11_4186 0.43 +1.5 443,779 + Ac3H11_4186 0.58 +0.0 443,779 + Ac3H11_4186 0.58 -0.8 443,779 + Ac3H11_4186 0.58 +0.3 443,779 + Ac3H11_4186 0.58 +2.0 444,026 + Ac3H11_4186 0.78 -1.0 444,026 + Ac3H11_4186 0.78 +0.8 444,026 + Ac3H11_4186 0.78 -0.4 444,026 + Ac3H11_4186 0.78 -1.2 444,027 - Ac3H11_4186 0.78 +0.9 444,027 - Ac3H11_4186 0.78 -0.1 444,028 + Ac3H11_4186 0.78 -0.2 444,029 - Ac3H11_4186 0.79 -0.6 444,116 - Ac3H11_4186 0.86 +0.9 444,299 + +0.4 444,325 + +0.1 444,326 - +1.0 444,340 - +0.9 444,492 + -1.5 444,492 + +0.1 444,492 + +0.1 444,492 + -0.5 444,493 - -0.1 444,507 + Ac3H11_4187 0.10 -0.3 444,567 + Ac3H11_4187 0.16 -0.7 444,568 - Ac3H11_4187 0.16 -0.2 444,568 - Ac3H11_4187 0.16 -0.0 444,568 - Ac3H11_4187 0.16 -0.7 444,568 - Ac3H11_4187 0.16 -0.0 444,609 + Ac3H11_4187 0.21 +1.1 444,609 + Ac3H11_4187 0.21 +0.5 444,609 + Ac3H11_4187 0.21 +0.1 444,609 + Ac3H11_4187 0.21 -1.1 444,610 - Ac3H11_4187 0.21 +0.7 444,610 - Ac3H11_4187 0.21 -0.4 444,610 - Ac3H11_4187 0.21 -0.4 444,610 - Ac3H11_4187 0.21 -1.8 444,610 - Ac3H11_4187 0.21 +0.6 444,753 + Ac3H11_4187 0.35 +0.5 444,754 - Ac3H11_4187 0.36 +0.8 444,864 + Ac3H11_4187 0.47 -0.9 444,864 + Ac3H11_4187 0.47 +0.6 444,864 + Ac3H11_4187 0.47 +0.5 444,864 + Ac3H11_4187 0.47 +0.8 444,865 - Ac3H11_4187 0.47 +1.1 444,966 + Ac3H11_4187 0.57 -0.7 444,966 + Ac3H11_4187 0.57 -0.4 444,966 + Ac3H11_4187 0.57 +0.0 444,966 + Ac3H11_4187 0.57 +0.8 444,966 + Ac3H11_4187 0.57 -0.4 444,966 + Ac3H11_4187 0.57 +2.1 444,966 + Ac3H11_4187 0.57 +0.3 444,966 + Ac3H11_4187 0.57 +0.0 444,966 + Ac3H11_4187 0.57 +0.1 444,966 + Ac3H11_4187 0.57 +0.9 444,966 + Ac3H11_4187 0.57 -0.2 444,966 + Ac3H11_4187 0.57 +1.0 444,966 + Ac3H11_4187 0.57 +0.2 444,966 + Ac3H11_4187 0.57 +0.2 444,967 - Ac3H11_4187 0.57 +0.3 444,967 - Ac3H11_4187 0.57 +1.5 444,967 - Ac3H11_4187 0.57 +0.2 444,967 - Ac3H11_4187 0.57 +0.3 444,967 - Ac3H11_4187 0.57 -0.7 444,967 - Ac3H11_4187 0.57 -1.1 444,967 - Ac3H11_4187 0.57 -0.8 444,967 - Ac3H11_4187 0.57 -0.8 444,967 - Ac3H11_4187 0.57 -0.2 444,967 - Ac3H11_4187 0.57 +0.8 444,967 - Ac3H11_4187 0.57 -0.1 445,021 - Ac3H11_4187 0.63 -0.2 445,021 - Ac3H11_4187 0.63 -0.5 445,168 - Ac3H11_4187 0.78 -0.0
Or see this region's nucleotide sequence