Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3607

Experiment: Tetracycline 0.00005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_3605 and Ac3H11_3606 are separated by 152 nucleotidesAc3H11_3606 and Ac3H11_3607 overlap by 23 nucleotidesAc3H11_3607 and Ac3H11_3608 are separated by 137 nucleotidesAc3H11_3608 and Ac3H11_3609 are separated by 30 nucleotides Ac3H11_3605 - FIG00349159: hypothetical protein, at 159,369 to 159,539 _3605 Ac3H11_3606 - Mlr1171 protein, at 159,692 to 160,294 _3606 Ac3H11_3607 - Metallo-beta-lactamase superfamily protein, at 160,272 to 161,240 _3607 Ac3H11_3608 - hypothetical protein, at 161,378 to 161,746 _3608 Ac3H11_3609 - Transcriptional regulator, IclR family, at 161,777 to 162,529 _3609 Position (kb) 160 161 162Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 159.279 kb on + strandat 159.279 kb on + strandat 159.279 kb on + strandat 159.279 kb on + strandat 159.279 kb on + strandat 159.472 kb on + strand, within Ac3H11_3605at 159.488 kb on + strand, within Ac3H11_3605at 159.542 kb on + strandat 159.542 kb on + strandat 159.542 kb on + strandat 159.542 kb on + strandat 159.542 kb on + strandat 159.542 kb on + strandat 159.542 kb on + strandat 159.543 kb on - strandat 159.543 kb on - strandat 159.543 kb on - strandat 159.543 kb on - strandat 159.543 kb on - strandat 159.543 kb on - strandat 159.543 kb on - strandat 159.543 kb on - strandat 159.543 kb on - strandat 159.576 kb on + strandat 159.995 kb on + strand, within Ac3H11_3606at 159.995 kb on + strand, within Ac3H11_3606at 159.996 kb on - strand, within Ac3H11_3606at 160.492 kb on + strand, within Ac3H11_3607at 160.492 kb on + strand, within Ac3H11_3607at 160.493 kb on - strand, within Ac3H11_3607at 160.493 kb on - strand, within Ac3H11_3607at 160.493 kb on - strand, within Ac3H11_3607at 160.552 kb on + strand, within Ac3H11_3607at 160.802 kb on - strand, within Ac3H11_3607at 160.954 kb on + strand, within Ac3H11_3607at 160.955 kb on - strand, within Ac3H11_3607at 160.969 kb on + strand, within Ac3H11_3607at 160.969 kb on + strand, within Ac3H11_3607at 160.970 kb on - strand, within Ac3H11_3607at 160.970 kb on - strand, within Ac3H11_3607at 161.191 kb on + strandat 161.557 kb on - strand, within Ac3H11_3608at 161.669 kb on + strand, within Ac3H11_3608at 161.669 kb on + strand, within Ac3H11_3608at 161.669 kb on + strand, within Ac3H11_3608at 161.669 kb on + strand, within Ac3H11_3608at 161.669 kb on + strand, within Ac3H11_3608at 161.670 kb on - strand, within Ac3H11_3608at 161.670 kb on - strand, within Ac3H11_3608at 161.670 kb on - strand, within Ac3H11_3608at 161.670 kb on - strand, within Ac3H11_3608at 161.670 kb on - strand, within Ac3H11_3608at 161.670 kb on - strand, within Ac3H11_3608at 161.693 kb on - strand, within Ac3H11_3608at 161.718 kb on + strandat 161.734 kb on - strandat 161.746 kb on + strandat 161.746 kb on + strandat 161.746 kb on + strandat 161.746 kb on + strandat 161.746 kb on + strandat 161.746 kb on + strandat 161.746 kb on + strandat 161.746 kb on + strandat 161.746 kb on + strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.747 kb on - strandat 161.763 kb on + strandat 161.778 kb on + strandat 161.779 kb on - strandat 161.779 kb on - strandat 161.835 kb on - strandat 161.835 kb on - strandat 161.835 kb on - strandat 161.945 kb on + strand, within Ac3H11_3609at 161.945 kb on + strand, within Ac3H11_3609at 161.945 kb on + strand, within Ac3H11_3609at 161.945 kb on + strand, within Ac3H11_3609at 161.946 kb on - strand, within Ac3H11_3609at 161.946 kb on - strand, within Ac3H11_3609at 161.946 kb on - strand, within Ac3H11_3609at 161.946 kb on - strand, within Ac3H11_3609at 161.970 kb on + strand, within Ac3H11_3609at 161.970 kb on + strand, within Ac3H11_3609at 162.195 kb on + strand, within Ac3H11_3609at 162.195 kb on + strand, within Ac3H11_3609at 162.195 kb on + strand, within Ac3H11_3609at 162.195 kb on + strand, within Ac3H11_3609at 162.195 kb on + strand, within Ac3H11_3609

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.00005 mg/ml
remove
159,279 + -0.8
159,279 + -0.0
159,279 + +0.1
159,279 + +0.7
159,279 + -0.1
159,472 + Ac3H11_3605 0.60 +0.4
159,488 + Ac3H11_3605 0.70 +1.4
159,542 + -0.9
159,542 + -0.6
159,542 + -3.4
159,542 + +0.1
159,542 + +0.0
159,542 + +0.3
159,542 + +0.2
159,543 - +2.5
159,543 - -0.9
159,543 - -0.4
159,543 - -0.0
159,543 - -0.2
159,543 - -0.5
159,543 - +0.1
159,543 - +0.5
159,543 - -0.3
159,576 + +1.3
159,995 + Ac3H11_3606 0.50 +0.3
159,995 + Ac3H11_3606 0.50 +0.3
159,996 - Ac3H11_3606 0.50 +0.6
160,492 + Ac3H11_3607 0.23 -0.8
160,492 + Ac3H11_3607 0.23 +0.5
160,493 - Ac3H11_3607 0.23 +0.9
160,493 - Ac3H11_3607 0.23 +0.6
160,493 - Ac3H11_3607 0.23 +0.4
160,552 + Ac3H11_3607 0.29 +0.3
160,802 - Ac3H11_3607 0.55 -0.3
160,954 + Ac3H11_3607 0.70 -1.7
160,955 - Ac3H11_3607 0.70 -0.5
160,969 + Ac3H11_3607 0.72 -0.0
160,969 + Ac3H11_3607 0.72 -0.4
160,970 - Ac3H11_3607 0.72 -1.5
160,970 - Ac3H11_3607 0.72 +0.2
161,191 + -0.4
161,557 - Ac3H11_3608 0.49 +1.0
161,669 + Ac3H11_3608 0.79 +0.2
161,669 + Ac3H11_3608 0.79 +0.5
161,669 + Ac3H11_3608 0.79 -0.1
161,669 + Ac3H11_3608 0.79 -0.6
161,669 + Ac3H11_3608 0.79 -1.7
161,670 - Ac3H11_3608 0.79 +0.5
161,670 - Ac3H11_3608 0.79 -1.0
161,670 - Ac3H11_3608 0.79 +0.8
161,670 - Ac3H11_3608 0.79 -0.2
161,670 - Ac3H11_3608 0.79 +0.8
161,670 - Ac3H11_3608 0.79 +0.4
161,693 - Ac3H11_3608 0.85 -0.7
161,718 + +1.0
161,734 - +0.4
161,746 + +1.9
161,746 + -0.0
161,746 + +0.3
161,746 + -0.9
161,746 + +0.1
161,746 + -0.3
161,746 + +1.2
161,746 + +1.0
161,746 + +0.4
161,747 - -0.3
161,747 - -2.0
161,747 - +0.6
161,747 - -0.5
161,747 - -0.7
161,747 - +0.3
161,747 - +0.5
161,747 - -1.3
161,747 - -0.1
161,747 - -0.3
161,747 - -0.2
161,747 - +0.3
161,747 - -0.2
161,763 + -0.0
161,778 + -0.4
161,779 - -0.2
161,779 - -1.1
161,835 - +0.6
161,835 - -1.4
161,835 - +0.9
161,945 + Ac3H11_3609 0.22 -2.0
161,945 + Ac3H11_3609 0.22 +0.7
161,945 + Ac3H11_3609 0.22 +0.1
161,945 + Ac3H11_3609 0.22 +0.1
161,946 - Ac3H11_3609 0.22 -0.5
161,946 - Ac3H11_3609 0.22 -0.2
161,946 - Ac3H11_3609 0.22 +0.1
161,946 - Ac3H11_3609 0.22 -0.4
161,970 + Ac3H11_3609 0.26 -0.6
161,970 + Ac3H11_3609 0.26 -0.5
162,195 + Ac3H11_3609 0.56 +0.4
162,195 + Ac3H11_3609 0.56 +0.4
162,195 + Ac3H11_3609 0.56 -0.5
162,195 + Ac3H11_3609 0.56 -2.0
162,195 + Ac3H11_3609 0.56 -0.4

Or see this region's nucleotide sequence