Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS30395

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS30390 and AZOBR_RS30395 are separated by 21 nucleotidesAZOBR_RS30395 and AZOBR_RS30400 are separated by 529 nucleotides AZOBR_RS30390: AZOBR_RS30390 - aspartate aminotransferase, at 163,648 to 165,279 _RS30390 AZOBR_RS30395: AZOBR_RS30395 - transporter, at 165,301 to 166,989 _RS30395 AZOBR_RS30400: AZOBR_RS30400 - ABC transporter substrate-binding protein, at 167,519 to 168,865 _RS30400 Position (kb) 165 166 167Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 164.333 kb on + strand, within AZOBR_RS30390at 164.348 kb on + strand, within AZOBR_RS30390at 164.415 kb on - strand, within AZOBR_RS30390at 164.634 kb on - strand, within AZOBR_RS30390at 164.660 kb on + strand, within AZOBR_RS30390at 164.741 kb on + strand, within AZOBR_RS30390at 164.741 kb on + strand, within AZOBR_RS30390at 164.741 kb on + strand, within AZOBR_RS30390at 164.741 kb on + strand, within AZOBR_RS30390at 164.741 kb on + strand, within AZOBR_RS30390at 164.741 kb on + strand, within AZOBR_RS30390at 164.741 kb on + strand, within AZOBR_RS30390at 164.742 kb on - strand, within AZOBR_RS30390at 164.742 kb on - strand, within AZOBR_RS30390at 164.828 kb on + strand, within AZOBR_RS30390at 164.829 kb on - strand, within AZOBR_RS30390at 164.829 kb on - strand, within AZOBR_RS30390at 164.829 kb on - strand, within AZOBR_RS30390at 164.879 kb on + strand, within AZOBR_RS30390at 164.879 kb on + strand, within AZOBR_RS30390at 164.879 kb on + strand, within AZOBR_RS30390at 164.954 kb on + strand, within AZOBR_RS30390at 164.955 kb on - strand, within AZOBR_RS30390at 164.955 kb on - strand, within AZOBR_RS30390at 165.011 kb on + strand, within AZOBR_RS30390at 165.011 kb on + strand, within AZOBR_RS30390at 165.074 kb on + strand, within AZOBR_RS30390at 165.074 kb on + strand, within AZOBR_RS30390at 165.074 kb on + strand, within AZOBR_RS30390at 165.074 kb on + strand, within AZOBR_RS30390at 165.074 kb on + strand, within AZOBR_RS30390at 165.075 kb on - strand, within AZOBR_RS30390at 165.263 kb on + strandat 165.359 kb on + strandat 165.359 kb on + strandat 165.491 kb on + strand, within AZOBR_RS30395at 165.701 kb on + strand, within AZOBR_RS30395at 165.824 kb on + strand, within AZOBR_RS30395at 165.824 kb on + strand, within AZOBR_RS30395at 165.825 kb on - strand, within AZOBR_RS30395at 165.825 kb on - strand, within AZOBR_RS30395at 165.825 kb on - strand, within AZOBR_RS30395at 165.825 kb on - strand, within AZOBR_RS30395at 165.905 kb on + strand, within AZOBR_RS30395at 165.905 kb on + strand, within AZOBR_RS30395at 165.906 kb on - strand, within AZOBR_RS30395at 165.989 kb on + strand, within AZOBR_RS30395at 165.989 kb on + strand, within AZOBR_RS30395at 165.989 kb on + strand, within AZOBR_RS30395at 165.990 kb on - strand, within AZOBR_RS30395at 166.001 kb on + strand, within AZOBR_RS30395at 166.002 kb on - strand, within AZOBR_RS30395at 166.352 kb on + strandat 166.353 kb on - strand, within AZOBR_RS30395at 166.353 kb on - strand, within AZOBR_RS30395at 166.353 kb on - strand, within AZOBR_RS30395at 166.353 kb on - strand, within AZOBR_RS30395at 166.493 kb on + strand, within AZOBR_RS30395at 166.493 kb on + strand, within AZOBR_RS30395at 166.493 kb on + strand, within AZOBR_RS30395at 166.493 kb on + strand, within AZOBR_RS30395at 166.494 kb on - strand, within AZOBR_RS30395at 166.494 kb on - strand, within AZOBR_RS30395at 166.494 kb on - strand, within AZOBR_RS30395at 166.494 kb on - strand, within AZOBR_RS30395at 166.494 kb on - strand, within AZOBR_RS30395at 166.494 kb on - strand, within AZOBR_RS30395at 166.782 kb on - strand, within AZOBR_RS30395at 166.782 kb on - strand, within AZOBR_RS30395at 166.942 kb on + strandat 167.094 kb on + strandat 167.105 kb on - strandat 167.514 kb on + strandat 167.514 kb on + strandat 167.514 kb on + strandat 167.514 kb on + strandat 167.514 kb on + strandat 167.514 kb on + strandat 167.514 kb on + strandat 167.514 kb on + strandat 167.514 kb on + strandat 167.515 kb on - strandat 167.515 kb on - strandat 167.515 kb on - strandat 167.515 kb on - strandat 167.515 kb on - strandat 167.518 kb on + strandat 167.518 kb on + strandat 167.518 kb on + strandat 167.518 kb on + strandat 167.518 kb on + strandat 167.518 kb on + strandat 167.518 kb on + strandat 167.518 kb on + strandat 167.518 kb on + strandat 167.518 kb on + strandat 167.518 kb on + strandat 167.518 kb on + strandat 167.518 kb on + strandat 167.518 kb on + strandat 167.518 kb on + strandat 167.519 kb on - strandat 167.519 kb on - strandat 167.519 kb on - strandat 167.519 kb on - strandat 167.519 kb on - strandat 167.519 kb on - strandat 167.519 kb on - strandat 167.519 kb on - strandat 167.519 kb on - strandat 167.519 kb on - strandat 167.519 kb on - strandat 167.519 kb on - strandat 167.519 kb on - strandat 167.519 kb on - strandat 167.729 kb on + strand, within AZOBR_RS30400at 167.730 kb on - strand, within AZOBR_RS30400at 167.828 kb on + strand, within AZOBR_RS30400at 167.829 kb on - strand, within AZOBR_RS30400at 167.829 kb on - strand, within AZOBR_RS30400at 167.829 kb on - strand, within AZOBR_RS30400at 167.897 kb on + strand, within AZOBR_RS30400at 167.897 kb on + strand, within AZOBR_RS30400at 167.897 kb on + strand, within AZOBR_RS30400at 167.897 kb on + strand, within AZOBR_RS30400at 167.897 kb on + strand, within AZOBR_RS30400at 167.898 kb on - strand, within AZOBR_RS30400at 167.898 kb on - strand, within AZOBR_RS30400at 167.898 kb on - strand, within AZOBR_RS30400at 167.898 kb on - strand, within AZOBR_RS30400at 167.898 kb on - strand, within AZOBR_RS30400at 167.898 kb on - strand, within AZOBR_RS30400at 167.898 kb on - strand, within AZOBR_RS30400at 167.898 kb on - strand, within AZOBR_RS30400at 167.898 kb on - strand, within AZOBR_RS30400at 167.921 kb on + strand, within AZOBR_RS30400at 167.922 kb on - strand, within AZOBR_RS30400

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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164,333 + AZOBR_RS30390 0.42 +0.2
164,348 + AZOBR_RS30390 0.43 -0.0
164,415 - AZOBR_RS30390 0.47 +0.1
164,634 - AZOBR_RS30390 0.60 +0.3
164,660 + AZOBR_RS30390 0.62 -3.0
164,741 + AZOBR_RS30390 0.67 -0.4
164,741 + AZOBR_RS30390 0.67 +0.4
164,741 + AZOBR_RS30390 0.67 +0.2
164,741 + AZOBR_RS30390 0.67 +0.1
164,741 + AZOBR_RS30390 0.67 +1.0
164,741 + AZOBR_RS30390 0.67 -2.1
164,741 + AZOBR_RS30390 0.67 +1.3
164,742 - AZOBR_RS30390 0.67 -2.2
164,742 - AZOBR_RS30390 0.67 -0.1
164,828 + AZOBR_RS30390 0.72 +0.1
164,829 - AZOBR_RS30390 0.72 +0.8
164,829 - AZOBR_RS30390 0.72 +0.6
164,829 - AZOBR_RS30390 0.72 -0.8
164,879 + AZOBR_RS30390 0.75 +0.6
164,879 + AZOBR_RS30390 0.75 +0.3
164,879 + AZOBR_RS30390 0.75 +0.6
164,954 + AZOBR_RS30390 0.80 -1.6
164,955 - AZOBR_RS30390 0.80 +0.7
164,955 - AZOBR_RS30390 0.80 +1.1
165,011 + AZOBR_RS30390 0.84 +0.1
165,011 + AZOBR_RS30390 0.84 -2.3
165,074 + AZOBR_RS30390 0.87 +0.2
165,074 + AZOBR_RS30390 0.87 -0.6
165,074 + AZOBR_RS30390 0.87 +0.9
165,074 + AZOBR_RS30390 0.87 -1.4
165,074 + AZOBR_RS30390 0.87 -0.2
165,075 - AZOBR_RS30390 0.87 -0.0
165,263 + -0.8
165,359 + -0.4
165,359 + +1.6
165,491 + AZOBR_RS30395 0.11 +0.5
165,701 + AZOBR_RS30395 0.24 -0.6
165,824 + AZOBR_RS30395 0.31 -0.5
165,824 + AZOBR_RS30395 0.31 +0.8
165,825 - AZOBR_RS30395 0.31 -0.3
165,825 - AZOBR_RS30395 0.31 +0.3
165,825 - AZOBR_RS30395 0.31 -0.9
165,825 - AZOBR_RS30395 0.31 -0.5
165,905 + AZOBR_RS30395 0.36 -0.6
165,905 + AZOBR_RS30395 0.36 +0.7
165,906 - AZOBR_RS30395 0.36 -0.9
165,989 + AZOBR_RS30395 0.41 -0.1
165,989 + AZOBR_RS30395 0.41 -0.2
165,989 + AZOBR_RS30395 0.41 -1.0
165,990 - AZOBR_RS30395 0.41 +2.1
166,001 + AZOBR_RS30395 0.41 +0.5
166,002 - AZOBR_RS30395 0.42 +0.5
166,352 + +0.4
166,353 - AZOBR_RS30395 0.62 -1.1
166,353 - AZOBR_RS30395 0.62 +0.1
166,353 - AZOBR_RS30395 0.62 +0.3
166,353 - AZOBR_RS30395 0.62 +0.4
166,493 + AZOBR_RS30395 0.71 -2.2
166,493 + AZOBR_RS30395 0.71 +1.1
166,493 + AZOBR_RS30395 0.71 -0.5
166,493 + AZOBR_RS30395 0.71 +0.6
166,494 - AZOBR_RS30395 0.71 +1.0
166,494 - AZOBR_RS30395 0.71 +0.5
166,494 - AZOBR_RS30395 0.71 -0.5
166,494 - AZOBR_RS30395 0.71 +0.8
166,494 - AZOBR_RS30395 0.71 -3.5
166,494 - AZOBR_RS30395 0.71 +0.3
166,782 - AZOBR_RS30395 0.88 -0.6
166,782 - AZOBR_RS30395 0.88 -0.6
166,942 + +0.6
167,094 + -0.0
167,105 - +0.1
167,514 + +0.0
167,514 + +0.0
167,514 + +0.4
167,514 + -1.0
167,514 + +0.0
167,514 + +0.2
167,514 + -1.6
167,514 + +0.0
167,514 + +0.5
167,515 - -0.2
167,515 - +0.9
167,515 - +0.2
167,515 - -0.4
167,515 - +1.4
167,518 + -1.0
167,518 + -0.2
167,518 + -0.9
167,518 + +0.2
167,518 + -0.0
167,518 + +0.6
167,518 + -0.1
167,518 + +0.0
167,518 + +1.0
167,518 + -0.2
167,518 + -0.0
167,518 + -0.1
167,518 + -0.4
167,518 + -0.0
167,518 + -0.9
167,519 - -0.0
167,519 - -0.5
167,519 - -0.8
167,519 - +0.7
167,519 - -2.2
167,519 - -0.3
167,519 - +0.9
167,519 - +0.5
167,519 - +1.5
167,519 - -0.2
167,519 - -1.0
167,519 - +0.9
167,519 - +0.2
167,519 - +0.7
167,729 + AZOBR_RS30400 0.16 -0.6
167,730 - AZOBR_RS30400 0.16 +0.4
167,828 + AZOBR_RS30400 0.23 -1.1
167,829 - AZOBR_RS30400 0.23 +1.4
167,829 - AZOBR_RS30400 0.23 +0.7
167,829 - AZOBR_RS30400 0.23 -0.2
167,897 + AZOBR_RS30400 0.28 +0.4
167,897 + AZOBR_RS30400 0.28 +0.7
167,897 + AZOBR_RS30400 0.28 -1.1
167,897 + AZOBR_RS30400 0.28 +0.3
167,897 + AZOBR_RS30400 0.28 +1.1
167,898 - AZOBR_RS30400 0.28 +1.1
167,898 - AZOBR_RS30400 0.28 +0.2
167,898 - AZOBR_RS30400 0.28 -1.3
167,898 - AZOBR_RS30400 0.28 -2.6
167,898 - AZOBR_RS30400 0.28 +0.8
167,898 - AZOBR_RS30400 0.28 -3.0
167,898 - AZOBR_RS30400 0.28 +0.3
167,898 - AZOBR_RS30400 0.28 -0.2
167,898 - AZOBR_RS30400 0.28 -0.8
167,921 + AZOBR_RS30400 0.30 -0.1
167,922 - AZOBR_RS30400 0.30 +0.2

Or see this region's nucleotide sequence