Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS19590

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS19585 and AZOBR_RS19590 are separated by 27 nucleotidesAZOBR_RS19590 and AZOBR_RS19595 are separated by 245 nucleotides AZOBR_RS19585: AZOBR_RS19585 - arginase, at 1,164,516 to 1,165,463 _RS19585 AZOBR_RS19590: AZOBR_RS19590 - ornithine-oxoacid aminotransferase, at 1,165,491 to 1,166,708 _RS19590 AZOBR_RS19595: AZOBR_RS19595 - deacylase, at 1,166,954 to 1,168,069 _RS19595 Position (kb) 1165 1166 1167Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1165.548 kb on + strandat 1165.549 kb on - strandat 1165.549 kb on - strandat 1165.549 kb on - strandat 1165.549 kb on - strandat 1165.590 kb on + strandat 1165.591 kb on - strandat 1165.638 kb on + strand, within AZOBR_RS19590at 1165.638 kb on + strand, within AZOBR_RS19590at 1165.756 kb on - strand, within AZOBR_RS19590at 1165.857 kb on + strand, within AZOBR_RS19590at 1166.445 kb on + strand, within AZOBR_RS19590at 1166.707 kb on - strandat 1166.707 kb on - strandat 1166.801 kb on + strandat 1167.489 kb on - strand, within AZOBR_RS19595at 1167.489 kb on - strand, within AZOBR_RS19595at 1167.489 kb on - strand, within AZOBR_RS19595at 1167.489 kb on - strand, within AZOBR_RS19595

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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1,165,548 + -0.0
1,165,549 - +0.4
1,165,549 - -4.1
1,165,549 - -0.1
1,165,549 - -4.1
1,165,590 + -0.3
1,165,591 - -0.1
1,165,638 + AZOBR_RS19590 0.12 -0.8
1,165,638 + AZOBR_RS19590 0.12 +0.5
1,165,756 - AZOBR_RS19590 0.22 -0.6
1,165,857 + AZOBR_RS19590 0.30 -0.1
1,166,445 + AZOBR_RS19590 0.78 -1.5
1,166,707 - -1.3
1,166,707 - -2.5
1,166,801 + +0.2
1,167,489 - AZOBR_RS19595 0.48 +1.1
1,167,489 - AZOBR_RS19595 0.48 +0.1
1,167,489 - AZOBR_RS19595 0.48 -0.4
1,167,489 - AZOBR_RS19595 0.48 +0.5

Or see this region's nucleotide sequence