Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS19585

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS19575 and AZOBR_RS19580 are separated by 379 nucleotidesAZOBR_RS19580 and AZOBR_RS19585 are separated by 172 nucleotidesAZOBR_RS19585 and AZOBR_RS19590 are separated by 27 nucleotides AZOBR_RS19575: AZOBR_RS19575 - chromosome partitioning protein, at 1,162,885 to 1,163,535 _RS19575 AZOBR_RS19580: AZOBR_RS19580 - AsnC family transcriptional regulator, at 1,163,915 to 1,164,343 _RS19580 AZOBR_RS19585: AZOBR_RS19585 - arginase, at 1,164,516 to 1,165,463 _RS19585 AZOBR_RS19590: AZOBR_RS19590 - ornithine-oxoacid aminotransferase, at 1,165,491 to 1,166,708 _RS19590 Position (kb) 1164 1165 1166Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1163.539 kb on + strandat 1163.707 kb on + strandat 1163.708 kb on - strandat 1163.911 kb on + strandat 1163.912 kb on - strandat 1163.916 kb on + strandat 1163.916 kb on + strandat 1163.917 kb on - strandat 1163.917 kb on - strandat 1163.917 kb on - strandat 1164.067 kb on - strand, within AZOBR_RS19580at 1164.067 kb on - strand, within AZOBR_RS19580at 1164.355 kb on - strandat 1165.548 kb on + strandat 1165.549 kb on - strandat 1165.549 kb on - strandat 1165.549 kb on - strandat 1165.549 kb on - strandat 1165.590 kb on + strandat 1165.591 kb on - strandat 1165.638 kb on + strand, within AZOBR_RS19590at 1165.638 kb on + strand, within AZOBR_RS19590at 1165.756 kb on - strand, within AZOBR_RS19590at 1165.857 kb on + strand, within AZOBR_RS19590at 1166.445 kb on + strand, within AZOBR_RS19590

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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1,163,539 + +1.0
1,163,707 + +0.7
1,163,708 - -0.9
1,163,911 + +0.2
1,163,912 - -0.8
1,163,916 + +0.2
1,163,916 + +0.4
1,163,917 - +0.5
1,163,917 - -0.1
1,163,917 - +0.4
1,164,067 - AZOBR_RS19580 0.35 +0.4
1,164,067 - AZOBR_RS19580 0.35 +0.5
1,164,355 - -0.2
1,165,548 + -0.0
1,165,549 - +0.4
1,165,549 - -4.1
1,165,549 - -0.1
1,165,549 - -4.1
1,165,590 + -0.3
1,165,591 - -0.1
1,165,638 + AZOBR_RS19590 0.12 -0.8
1,165,638 + AZOBR_RS19590 0.12 +0.5
1,165,756 - AZOBR_RS19590 0.22 -0.6
1,165,857 + AZOBR_RS19590 0.30 -0.1
1,166,445 + AZOBR_RS19590 0.78 -1.5

Or see this region's nucleotide sequence