Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS19010 and AZOBR_RS19015 are separated by 164 nucleotides AZOBR_RS19015 and AZOBR_RS19020 are separated by 80 nucleotides AZOBR_RS19020 and AZOBR_RS19025 are separated by 135 nucleotides
AZOBR_RS19010: AZOBR_RS19010 - hypothetical protein, at 1,035,489 to 1,036,175
_RS19010
AZOBR_RS19015: AZOBR_RS19015 - regulator, at 1,036,340 to 1,036,900
_RS19015
AZOBR_RS19020: AZOBR_RS19020 - multidrug ABC transporter permease, at 1,036,981 to 1,037,784
_RS19020
AZOBR_RS19025: AZOBR_RS19025 - acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] (from data) , at 1,037,920 to 1,039,089
_RS19025
Position (kb)
1036
1037
1038 Strain fitness (log2 ratio)
-2
-1
0
1 at 1036.341 kb on + strand at 1036.392 kb on + strand at 1037.050 kb on + strand at 1037.128 kb on + strand, within AZOBR_RS19020 at 1037.128 kb on + strand, within AZOBR_RS19020 at 1037.128 kb on + strand, within AZOBR_RS19020 at 1037.129 kb on - strand, within AZOBR_RS19020 at 1037.186 kb on - strand, within AZOBR_RS19020 at 1037.579 kb on - strand, within AZOBR_RS19020 at 1037.686 kb on - strand, within AZOBR_RS19020 at 1037.768 kb on - strand at 1037.857 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 1,036,341 + +1.1 1,036,392 + -0.4 1,037,050 + -2.2 1,037,128 + AZOBR_RS19020 0.18 +0.9 1,037,128 + AZOBR_RS19020 0.18 -2.5 1,037,128 + AZOBR_RS19020 0.18 -1.1 1,037,129 - AZOBR_RS19020 0.18 +0.6 1,037,186 - AZOBR_RS19020 0.25 +1.1 1,037,579 - AZOBR_RS19020 0.74 -0.1 1,037,686 - AZOBR_RS19020 0.88 +1.2 1,037,768 - -0.4 1,037,857 + +0.2
Or see this region's nucleotide sequence