Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS06050

Experiment: L-Histidine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS06045 and AZOBR_RS06050 are separated by 230 nucleotidesAZOBR_RS06050 and AZOBR_RS06055 are separated by 19 nucleotidesAZOBR_RS06055 and AZOBR_RS06060 are separated by 44 nucleotides AZOBR_RS06045: AZOBR_RS06045 - murein transglycosylase, at 1,282,666 to 1,283,976 _RS06045 AZOBR_RS06050: AZOBR_RS06050 - hypothetical protein, at 1,284,207 to 1,284,557 _RS06050 AZOBR_RS06055: AZOBR_RS06055 - hypothetical protein, at 1,284,577 to 1,285,362 _RS06055 AZOBR_RS06060: AZOBR_RS06060 - membrane protein, at 1,285,407 to 1,288,049 _RS06060 Position (kb) 1284 1285Strain fitness (log2 ratio) -1 0 1 2at 1283.456 kb on + strand, within AZOBR_RS06045at 1283.456 kb on + strand, within AZOBR_RS06045at 1283.654 kb on + strandat 1283.655 kb on - strand, within AZOBR_RS06045at 1284.016 kb on + strandat 1284.016 kb on + strandat 1284.069 kb on + strandat 1284.069 kb on + strandat 1284.069 kb on + strandat 1284.070 kb on - strandat 1284.354 kb on + strand, within AZOBR_RS06050at 1284.354 kb on + strand, within AZOBR_RS06050at 1284.354 kb on + strand, within AZOBR_RS06050at 1284.354 kb on + strand, within AZOBR_RS06050at 1284.354 kb on + strand, within AZOBR_RS06050at 1284.354 kb on + strand, within AZOBR_RS06050at 1284.354 kb on + strand, within AZOBR_RS06050at 1284.355 kb on - strand, within AZOBR_RS06050at 1284.355 kb on - strand, within AZOBR_RS06050at 1284.355 kb on - strand, within AZOBR_RS06050at 1284.355 kb on - strand, within AZOBR_RS06050at 1284.355 kb on - strand, within AZOBR_RS06050at 1284.355 kb on - strand, within AZOBR_RS06050at 1284.355 kb on - strand, within AZOBR_RS06050at 1284.355 kb on - strand, within AZOBR_RS06050at 1284.355 kb on - strand, within AZOBR_RS06050at 1284.453 kb on + strand, within AZOBR_RS06050at 1284.512 kb on + strand, within AZOBR_RS06050at 1284.513 kb on - strand, within AZOBR_RS06050at 1284.555 kb on + strandat 1284.556 kb on - strandat 1284.556 kb on - strandat 1284.698 kb on - strand, within AZOBR_RS06055at 1284.739 kb on + strand, within AZOBR_RS06055at 1284.739 kb on + strand, within AZOBR_RS06055at 1284.739 kb on + strand, within AZOBR_RS06055at 1285.177 kb on + strand, within AZOBR_RS06055at 1285.178 kb on - strand, within AZOBR_RS06055at 1285.178 kb on - strand, within AZOBR_RS06055

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
remove
1,283,456 + AZOBR_RS06045 0.60 +0.3
1,283,456 + AZOBR_RS06045 0.60 +0.8
1,283,654 + +1.1
1,283,655 - AZOBR_RS06045 0.75 +1.8
1,284,016 + +0.4
1,284,016 + +0.5
1,284,069 + +0.1
1,284,069 + +0.1
1,284,069 + +0.8
1,284,070 - -0.4
1,284,354 + AZOBR_RS06050 0.42 -0.1
1,284,354 + AZOBR_RS06050 0.42 +1.1
1,284,354 + AZOBR_RS06050 0.42 -0.0
1,284,354 + AZOBR_RS06050 0.42 -1.4
1,284,354 + AZOBR_RS06050 0.42 +0.3
1,284,354 + AZOBR_RS06050 0.42 +0.1
1,284,354 + AZOBR_RS06050 0.42 +1.5
1,284,355 - AZOBR_RS06050 0.42 -0.1
1,284,355 - AZOBR_RS06050 0.42 +1.0
1,284,355 - AZOBR_RS06050 0.42 +0.2
1,284,355 - AZOBR_RS06050 0.42 +0.2
1,284,355 - AZOBR_RS06050 0.42 -0.5
1,284,355 - AZOBR_RS06050 0.42 -0.3
1,284,355 - AZOBR_RS06050 0.42 +2.0
1,284,355 - AZOBR_RS06050 0.42 +0.4
1,284,355 - AZOBR_RS06050 0.42 -0.6
1,284,453 + AZOBR_RS06050 0.70 -0.1
1,284,512 + AZOBR_RS06050 0.87 +0.4
1,284,513 - AZOBR_RS06050 0.87 +1.4
1,284,555 + +1.9
1,284,556 - +0.5
1,284,556 - -0.2
1,284,698 - AZOBR_RS06055 0.15 -0.5
1,284,739 + AZOBR_RS06055 0.21 +0.5
1,284,739 + AZOBR_RS06055 0.21 -0.3
1,284,739 + AZOBR_RS06055 0.21 -0.2
1,285,177 + AZOBR_RS06055 0.76 -0.5
1,285,178 - AZOBR_RS06055 0.76 -0.7
1,285,178 - AZOBR_RS06055 0.76 -0.1

Or see this region's nucleotide sequence