Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2759

Experiment: MoYLS4 with Dimethyl Sulfoxide 10 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2758 and DvMF_2759 are separated by 705 nucleotides DvMF_2758: DvMF_2758 - diguanylate cyclase with PAS/PAC sensor (RefSeq), at 3,484,444 to 3,486,540 _2758 DvMF_2759: DvMF_2759 - protein of unknown function DUF255 (RefSeq), at 3,487,246 to 3,489,516 _2759 Position (kb) 3487 3488 3489 3490Strain fitness (log2 ratio) -1 0 1at 3486.389 kb on - strandat 3486.485 kb on + strandat 3486.567 kb on - strandat 3486.992 kb on - strandat 3487.043 kb on + strandat 3487.086 kb on + strandat 3487.086 kb on + strandat 3487.098 kb on + strandat 3487.176 kb on - strandat 3487.370 kb on - strandat 3487.390 kb on - strandat 3487.468 kb on + strandat 3487.574 kb on + strand, within DvMF_2759at 3487.648 kb on + strand, within DvMF_2759at 3487.666 kb on - strand, within DvMF_2759at 3487.673 kb on + strand, within DvMF_2759at 3487.681 kb on - strand, within DvMF_2759at 3488.015 kb on - strand, within DvMF_2759at 3488.162 kb on - strand, within DvMF_2759at 3488.162 kb on - strand, within DvMF_2759at 3488.167 kb on - strand, within DvMF_2759at 3488.206 kb on + strand, within DvMF_2759at 3488.209 kb on + strand, within DvMF_2759at 3488.257 kb on + strand, within DvMF_2759at 3488.324 kb on - strand, within DvMF_2759at 3488.332 kb on - strand, within DvMF_2759at 3488.357 kb on - strand, within DvMF_2759at 3488.464 kb on + strand, within DvMF_2759at 3488.530 kb on + strand, within DvMF_2759at 3488.570 kb on + strand, within DvMF_2759at 3488.570 kb on + strand, within DvMF_2759at 3488.570 kb on + strand, within DvMF_2759at 3489.043 kb on + strand, within DvMF_2759at 3489.045 kb on + strand, within DvMF_2759at 3489.316 kb on - strandat 3489.328 kb on - strandat 3489.584 kb on + strandat 3489.626 kb on + strandat 3489.660 kb on + strandat 3489.668 kb on - strandat 3489.680 kb on + strandat 3489.893 kb on - strandat 3489.893 kb on - strandat 3489.903 kb on - strandat 3490.123 kb on + strandat 3490.287 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 10 %
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3,486,389 - -0.5
3,486,485 + -0.6
3,486,567 - -0.1
3,486,992 - -0.3
3,487,043 + -0.2
3,487,086 + -0.3
3,487,086 + -0.1
3,487,098 + -0.4
3,487,176 - -0.1
3,487,370 - -0.3
3,487,390 - -0.3
3,487,468 + -0.5
3,487,574 + DvMF_2759 0.14 -0.0
3,487,648 + DvMF_2759 0.18 -0.0
3,487,666 - DvMF_2759 0.18 -0.6
3,487,673 + DvMF_2759 0.19 -0.3
3,487,681 - DvMF_2759 0.19 -0.7
3,488,015 - DvMF_2759 0.34 -0.2
3,488,162 - DvMF_2759 0.40 -0.0
3,488,162 - DvMF_2759 0.40 +0.1
3,488,167 - DvMF_2759 0.41 -0.4
3,488,206 + DvMF_2759 0.42 -1.7
3,488,209 + DvMF_2759 0.42 -0.5
3,488,257 + DvMF_2759 0.45 -0.3
3,488,324 - DvMF_2759 0.47 -0.4
3,488,332 - DvMF_2759 0.48 -0.5
3,488,357 - DvMF_2759 0.49 -0.3
3,488,464 + DvMF_2759 0.54 -0.1
3,488,530 + DvMF_2759 0.57 -0.4
3,488,570 + DvMF_2759 0.58 -0.9
3,488,570 + DvMF_2759 0.58 -0.3
3,488,570 + DvMF_2759 0.58 -0.6
3,489,043 + DvMF_2759 0.79 -0.3
3,489,045 + DvMF_2759 0.79 -0.3
3,489,316 - -0.4
3,489,328 - +1.0
3,489,584 + -0.2
3,489,626 + -0.6
3,489,660 + -0.4
3,489,668 - -0.2
3,489,680 + -0.4
3,489,893 - -0.1
3,489,893 - +0.1
3,489,903 - +0.0
3,490,123 + -0.3
3,490,287 + -0.2

Or see this region's nucleotide sequence