Experiment: MoYLS4 with Dimethyl Sulfoxide 10 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1610 and DvMF_1611 are separated by 4 nucleotides DvMF_1611 and DvMF_1612 overlap by 11 nucleotides DvMF_1612 and DvMF_1613 are separated by 616 nucleotides
DvMF_1610: DvMF_1610 - anaerobic dimethyl sulfoxide reductase subunit C (RefSeq), at 1,982,935 to 1,983,810
_1610
DvMF_1611: DvMF_1611 - dimethylsulfoxide reductase, chain B (RefSeq), at 1,983,815 to 1,984,432
_1611
DvMF_1612: DvMF_1612 - anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family (RefSeq), at 1,984,422 to 1,986,884
_1612
DvMF_1613: DvMF_1613 - formylmethanofuran dehydrogenase subunit E region (RefSeq), at 1,987,501 to 1,989,144
_1613
Position (kb)
1984
1985
1986
1987 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1983.470 kb on + strand, within DvMF_1610 at 1983.588 kb on - strand, within DvMF_1610 at 1983.933 kb on + strand, within DvMF_1611 at 1983.975 kb on + strand, within DvMF_1611 at 1984.078 kb on - strand, within DvMF_1611 at 1984.103 kb on - strand, within DvMF_1611 at 1984.336 kb on - strand, within DvMF_1611 at 1984.349 kb on + strand, within DvMF_1611 at 1984.389 kb on + strand at 1984.417 kb on - strand at 1984.492 kb on + strand at 1984.500 kb on - strand at 1984.572 kb on + strand at 1984.734 kb on - strand, within DvMF_1612 at 1984.775 kb on - strand, within DvMF_1612 at 1984.784 kb on + strand, within DvMF_1612 at 1984.784 kb on + strand, within DvMF_1612 at 1984.836 kb on + strand, within DvMF_1612 at 1984.963 kb on + strand, within DvMF_1612 at 1985.004 kb on - strand, within DvMF_1612 at 1985.060 kb on + strand, within DvMF_1612 at 1985.266 kb on + strand, within DvMF_1612 at 1985.382 kb on - strand, within DvMF_1612 at 1985.475 kb on - strand, within DvMF_1612 at 1985.506 kb on + strand, within DvMF_1612 at 1985.533 kb on - strand, within DvMF_1612 at 1985.864 kb on - strand, within DvMF_1612 at 1985.928 kb on + strand, within DvMF_1612 at 1986.091 kb on - strand, within DvMF_1612 at 1986.425 kb on - strand, within DvMF_1612 at 1986.799 kb on + strand at 1986.853 kb on + strand at 1986.861 kb on - strand at 1987.097 kb on - strand at 1987.600 kb on + strand at 1987.652 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 10 % remove 1,983,470 + DvMF_1610 0.61 -2.1 1,983,588 - DvMF_1610 0.75 -1.7 1,983,933 + DvMF_1611 0.19 -0.0 1,983,975 + DvMF_1611 0.26 -0.1 1,984,078 - DvMF_1611 0.43 -0.5 1,984,103 - DvMF_1611 0.47 -0.4 1,984,336 - DvMF_1611 0.84 -0.3 1,984,349 + DvMF_1611 0.86 -0.7 1,984,389 + -0.5 1,984,417 - -0.5 1,984,492 + -0.6 1,984,500 - -0.6 1,984,572 + -0.4 1,984,734 - DvMF_1612 0.13 -0.1 1,984,775 - DvMF_1612 0.14 -0.6 1,984,784 + DvMF_1612 0.15 -0.7 1,984,784 + DvMF_1612 0.15 -0.4 1,984,836 + DvMF_1612 0.17 -0.7 1,984,963 + DvMF_1612 0.22 -0.4 1,985,004 - DvMF_1612 0.24 -0.3 1,985,060 + DvMF_1612 0.26 -0.3 1,985,266 + DvMF_1612 0.34 -0.6 1,985,382 - DvMF_1612 0.39 -0.7 1,985,475 - DvMF_1612 0.43 -0.5 1,985,506 + DvMF_1612 0.44 -0.4 1,985,533 - DvMF_1612 0.45 -0.5 1,985,864 - DvMF_1612 0.59 -0.4 1,985,928 + DvMF_1612 0.61 -0.2 1,986,091 - DvMF_1612 0.68 -0.2 1,986,425 - DvMF_1612 0.81 -0.2 1,986,799 + -0.1 1,986,853 + -0.4 1,986,861 - -0.1 1,987,097 - -0.5 1,987,600 + -2.5 1,987,652 + -2.8
Or see this region's nucleotide sequence