Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1612

Experiment: MoYLS4 with Dimethyl Sulfoxide 10 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1610 and DvMF_1611 are separated by 4 nucleotidesDvMF_1611 and DvMF_1612 overlap by 11 nucleotidesDvMF_1612 and DvMF_1613 are separated by 616 nucleotides DvMF_1610: DvMF_1610 - anaerobic dimethyl sulfoxide reductase subunit C (RefSeq), at 1,982,935 to 1,983,810 _1610 DvMF_1611: DvMF_1611 - dimethylsulfoxide reductase, chain B (RefSeq), at 1,983,815 to 1,984,432 _1611 DvMF_1612: DvMF_1612 - anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family (RefSeq), at 1,984,422 to 1,986,884 _1612 DvMF_1613: DvMF_1613 - formylmethanofuran dehydrogenase subunit E region (RefSeq), at 1,987,501 to 1,989,144 _1613 Position (kb) 1984 1985 1986 1987Strain fitness (log2 ratio) -3 -2 -1 0 1at 1983.470 kb on + strand, within DvMF_1610at 1983.588 kb on - strand, within DvMF_1610at 1983.933 kb on + strand, within DvMF_1611at 1983.975 kb on + strand, within DvMF_1611at 1984.078 kb on - strand, within DvMF_1611at 1984.103 kb on - strand, within DvMF_1611at 1984.336 kb on - strand, within DvMF_1611at 1984.349 kb on + strand, within DvMF_1611at 1984.389 kb on + strandat 1984.417 kb on - strandat 1984.492 kb on + strandat 1984.500 kb on - strandat 1984.572 kb on + strandat 1984.734 kb on - strand, within DvMF_1612at 1984.775 kb on - strand, within DvMF_1612at 1984.784 kb on + strand, within DvMF_1612at 1984.784 kb on + strand, within DvMF_1612at 1984.836 kb on + strand, within DvMF_1612at 1984.963 kb on + strand, within DvMF_1612at 1985.004 kb on - strand, within DvMF_1612at 1985.060 kb on + strand, within DvMF_1612at 1985.266 kb on + strand, within DvMF_1612at 1985.382 kb on - strand, within DvMF_1612at 1985.475 kb on - strand, within DvMF_1612at 1985.506 kb on + strand, within DvMF_1612at 1985.533 kb on - strand, within DvMF_1612at 1985.864 kb on - strand, within DvMF_1612at 1985.928 kb on + strand, within DvMF_1612at 1986.091 kb on - strand, within DvMF_1612at 1986.425 kb on - strand, within DvMF_1612at 1986.799 kb on + strandat 1986.853 kb on + strandat 1986.861 kb on - strandat 1987.097 kb on - strandat 1987.600 kb on + strandat 1987.652 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 10 %
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1,983,470 + DvMF_1610 0.61 -2.1
1,983,588 - DvMF_1610 0.75 -1.7
1,983,933 + DvMF_1611 0.19 -0.0
1,983,975 + DvMF_1611 0.26 -0.1
1,984,078 - DvMF_1611 0.43 -0.5
1,984,103 - DvMF_1611 0.47 -0.4
1,984,336 - DvMF_1611 0.84 -0.3
1,984,349 + DvMF_1611 0.86 -0.7
1,984,389 + -0.5
1,984,417 - -0.5
1,984,492 + -0.6
1,984,500 - -0.6
1,984,572 + -0.4
1,984,734 - DvMF_1612 0.13 -0.1
1,984,775 - DvMF_1612 0.14 -0.6
1,984,784 + DvMF_1612 0.15 -0.7
1,984,784 + DvMF_1612 0.15 -0.4
1,984,836 + DvMF_1612 0.17 -0.7
1,984,963 + DvMF_1612 0.22 -0.4
1,985,004 - DvMF_1612 0.24 -0.3
1,985,060 + DvMF_1612 0.26 -0.3
1,985,266 + DvMF_1612 0.34 -0.6
1,985,382 - DvMF_1612 0.39 -0.7
1,985,475 - DvMF_1612 0.43 -0.5
1,985,506 + DvMF_1612 0.44 -0.4
1,985,533 - DvMF_1612 0.45 -0.5
1,985,864 - DvMF_1612 0.59 -0.4
1,985,928 + DvMF_1612 0.61 -0.2
1,986,091 - DvMF_1612 0.68 -0.2
1,986,425 - DvMF_1612 0.81 -0.2
1,986,799 + -0.1
1,986,853 + -0.4
1,986,861 - -0.1
1,987,097 - -0.5
1,987,600 + -2.5
1,987,652 + -2.8

Or see this region's nucleotide sequence