Experiment: MoYLS4 with Dimethyl Sulfoxide 10 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1609 and DvMF_1610 are separated by 83 nucleotides DvMF_1610 and DvMF_1611 are separated by 4 nucleotides DvMF_1611 and DvMF_1612 overlap by 11 nucleotides
DvMF_1609: DvMF_1609 - cytoplasmic chaperone TorD family protein (RefSeq), at 1,981,997 to 1,982,851
_1609
DvMF_1610: DvMF_1610 - anaerobic dimethyl sulfoxide reductase subunit C (RefSeq), at 1,982,935 to 1,983,810
_1610
DvMF_1611: DvMF_1611 - dimethylsulfoxide reductase, chain B (RefSeq), at 1,983,815 to 1,984,432
_1611
DvMF_1612: DvMF_1612 - anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family (RefSeq), at 1,984,422 to 1,986,884
_1612
Position (kb)
1982
1983
1984 Strain fitness (log2 ratio)
-2
-1
0
1 at 1981.962 kb on + strand at 1982.168 kb on + strand, within DvMF_1609 at 1982.277 kb on - strand, within DvMF_1609 at 1982.750 kb on + strand, within DvMF_1609 at 1982.866 kb on - strand at 1982.916 kb on + strand at 1982.958 kb on + strand at 1983.020 kb on + strand at 1983.168 kb on + strand, within DvMF_1610 at 1983.246 kb on - strand, within DvMF_1610 at 1983.253 kb on - strand, within DvMF_1610 at 1983.377 kb on + strand, within DvMF_1610 at 1983.470 kb on + strand, within DvMF_1610 at 1983.588 kb on - strand, within DvMF_1610 at 1983.933 kb on + strand, within DvMF_1611 at 1983.975 kb on + strand, within DvMF_1611 at 1984.078 kb on - strand, within DvMF_1611 at 1984.103 kb on - strand, within DvMF_1611 at 1984.336 kb on - strand, within DvMF_1611 at 1984.349 kb on + strand, within DvMF_1611 at 1984.389 kb on + strand at 1984.417 kb on - strand at 1984.492 kb on + strand at 1984.500 kb on - strand at 1984.572 kb on + strand at 1984.734 kb on - strand, within DvMF_1612 at 1984.775 kb on - strand, within DvMF_1612 at 1984.784 kb on + strand, within DvMF_1612 at 1984.784 kb on + strand, within DvMF_1612
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 10 % remove 1,981,962 + -0.8 1,982,168 + DvMF_1609 0.20 -0.4 1,982,277 - DvMF_1609 0.33 +0.0 1,982,750 + DvMF_1609 0.88 +0.8 1,982,866 - -0.1 1,982,916 + -1.7 1,982,958 + -1.3 1,983,020 + -2.0 1,983,168 + DvMF_1610 0.27 -1.6 1,983,246 - DvMF_1610 0.36 -1.7 1,983,253 - DvMF_1610 0.36 -1.5 1,983,377 + DvMF_1610 0.50 -2.0 1,983,470 + DvMF_1610 0.61 -2.1 1,983,588 - DvMF_1610 0.75 -1.7 1,983,933 + DvMF_1611 0.19 -0.0 1,983,975 + DvMF_1611 0.26 -0.1 1,984,078 - DvMF_1611 0.43 -0.5 1,984,103 - DvMF_1611 0.47 -0.4 1,984,336 - DvMF_1611 0.84 -0.3 1,984,349 + DvMF_1611 0.86 -0.7 1,984,389 + -0.5 1,984,417 - -0.5 1,984,492 + -0.6 1,984,500 - -0.6 1,984,572 + -0.4 1,984,734 - DvMF_1612 0.13 -0.1 1,984,775 - DvMF_1612 0.14 -0.6 1,984,784 + DvMF_1612 0.15 -0.7 1,984,784 + DvMF_1612 0.15 -0.4
Or see this region's nucleotide sequence