Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1109

Experiment: MoYLS4 with Dimethyl Sulfoxide 10 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1108 and DvMF_1109 are separated by 159 nucleotidesDvMF_1109 and DvMF_1110 are separated by 360 nucleotidesDvMF_1110 and DvMF_1111 are separated by 205 nucleotides DvMF_1108: DvMF_1108 - endo-1,4-beta-xylanase-like protein (RefSeq), at 1,357,884 to 1,358,660 _1108 DvMF_1109: DvMF_1109 - sodium/calcium exchanger membrane region (RefSeq), at 1,358,820 to 1,360,046 _1109 DvMF_1110: DvMF_1110 - hypothetical protein (RefSeq), at 1,360,407 to 1,360,715 _1110 DvMF_1111: DvMF_1111 - DsrE family protein (RefSeq), at 1,360,921 to 1,361,130 _1111 Position (kb) 1358 1359 1360 1361Strain fitness (log2 ratio) -2 -1 0 1at 1357.868 kb on + strandat 1357.954 kb on - strandat 1358.099 kb on + strand, within DvMF_1108at 1358.101 kb on + strand, within DvMF_1108at 1358.109 kb on - strand, within DvMF_1108at 1358.171 kb on + strand, within DvMF_1108at 1358.221 kb on - strand, within DvMF_1108at 1358.478 kb on + strand, within DvMF_1108at 1358.510 kb on + strand, within DvMF_1108at 1358.518 kb on - strand, within DvMF_1108at 1358.564 kb on + strand, within DvMF_1108at 1358.567 kb on - strand, within DvMF_1108at 1358.577 kb on - strand, within DvMF_1108at 1358.783 kb on + strandat 1358.883 kb on + strandat 1358.893 kb on + strandat 1359.278 kb on + strand, within DvMF_1109at 1359.335 kb on - strand, within DvMF_1109at 1359.508 kb on + strand, within DvMF_1109at 1359.623 kb on - strand, within DvMF_1109at 1359.711 kb on - strand, within DvMF_1109at 1360.004 kb on - strandat 1360.113 kb on - strandat 1360.297 kb on - strandat 1360.340 kb on + strandat 1360.499 kb on - strand, within DvMF_1110at 1360.575 kb on + strand, within DvMF_1110at 1360.865 kb on + strandat 1360.973 kb on - strand, within DvMF_1111

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 10 %
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1,357,868 + -0.3
1,357,954 - -0.5
1,358,099 + DvMF_1108 0.28 -0.2
1,358,101 + DvMF_1108 0.28 -0.6
1,358,109 - DvMF_1108 0.29 +0.0
1,358,171 + DvMF_1108 0.37 -0.3
1,358,221 - DvMF_1108 0.43 -0.4
1,358,478 + DvMF_1108 0.76 -0.2
1,358,510 + DvMF_1108 0.81 -0.4
1,358,518 - DvMF_1108 0.82 -0.5
1,358,564 + DvMF_1108 0.88 -0.3
1,358,567 - DvMF_1108 0.88 -0.4
1,358,577 - DvMF_1108 0.89 -0.3
1,358,783 + +0.1
1,358,883 + -0.4
1,358,893 + -2.0
1,359,278 + DvMF_1109 0.37 -1.7
1,359,335 - DvMF_1109 0.42 -1.9
1,359,508 + DvMF_1109 0.56 -1.5
1,359,623 - DvMF_1109 0.65 -1.7
1,359,711 - DvMF_1109 0.73 -2.3
1,360,004 - -1.4
1,360,113 - -0.9
1,360,297 - -0.5
1,360,340 + +0.1
1,360,499 - DvMF_1110 0.30 -0.3
1,360,575 + DvMF_1110 0.54 -1.0
1,360,865 + -0.7
1,360,973 - DvMF_1111 0.25 -0.9

Or see this region's nucleotide sequence