Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0380

Experiment: MoYLS4 with Dimethyl Sulfoxide 10 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0379 and DvMF_0380 are separated by 213 nucleotidesDvMF_0380 and DvMF_0381 are separated by 466 nucleotides DvMF_0379: DvMF_0379 - natural resistance-associated macrophage protein (RefSeq), at 445,762 to 447,087 _0379 DvMF_0380: DvMF_0380 - hypothetical protein (RefSeq), at 447,301 to 447,816 _0380 DvMF_0381: DvMF_0381 - L-lactate transport (RefSeq), at 448,283 to 449,803 _0381 Position (kb) 447 448Strain fitness (log2 ratio) -2 -1 0 1at 446.328 kb on - strand, within DvMF_0379at 446.351 kb on - strand, within DvMF_0379at 446.387 kb on - strand, within DvMF_0379at 446.795 kb on - strand, within DvMF_0379at 446.796 kb on + strand, within DvMF_0379at 447.095 kb on - strandat 447.190 kb on + strandat 447.208 kb on - strandat 447.305 kb on - strandat 447.359 kb on + strand, within DvMF_0380at 447.432 kb on + strand, within DvMF_0380at 447.440 kb on - strand, within DvMF_0380at 447.440 kb on - strand, within DvMF_0380at 447.440 kb on - strand, within DvMF_0380at 447.440 kb on - strand, within DvMF_0380at 447.440 kb on - strand, within DvMF_0380at 448.041 kb on - strandat 448.073 kb on + strandat 448.099 kb on - strandat 448.129 kb on - strandat 448.287 kb on + strandat 448.674 kb on + strand, within DvMF_0381at 448.676 kb on - strand, within DvMF_0381

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 10 %
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446,328 - DvMF_0379 0.43 -0.1
446,351 - DvMF_0379 0.44 +0.1
446,387 - DvMF_0379 0.47 +0.0
446,795 - DvMF_0379 0.78 -0.7
446,796 + DvMF_0379 0.78 -0.3
447,095 - -0.3
447,190 + -0.1
447,208 - +0.0
447,305 - -0.7
447,359 + DvMF_0380 0.11 -0.8
447,432 + DvMF_0380 0.25 -0.3
447,440 - DvMF_0380 0.27 -0.3
447,440 - DvMF_0380 0.27 -0.1
447,440 - DvMF_0380 0.27 -0.3
447,440 - DvMF_0380 0.27 -0.4
447,440 - DvMF_0380 0.27 -0.1
448,041 - +0.2
448,073 + -0.2
448,099 - -0.2
448,129 - -0.1
448,287 + -0.5
448,674 + DvMF_0381 0.26 -0.6
448,676 - DvMF_0381 0.26 -2.6

Or see this region's nucleotide sequence