Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08245

Experiment: formate McAA lipolic dropout

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	formate McAA lipolic dropout
1,516,317	-				-2.0
1,516,317	-				-1.4
1,516,318	+				-0.3
1,516,318	+				-1.8
1,516,327	-				+0.8
1,516,328	+				-1.0
1,516,328	+				-0.1
1,516,328	+				-1.0
1,516,350	-				-0.0
1,516,354	-				-2.6
1,516,355	+				-2.4
1,516,458	+		MMJJ_RS08235	0.28	+0.1
1,516,511	+		MMJJ_RS08235	0.47	-0.6
1,516,511	+		MMJJ_RS08235	0.47	-1.3
1,516,590	+		MMJJ_RS08235	0.76	-0.9
1,516,653	-				+0.2
1,516,657	-				-0.2
1,516,672	-				+0.5
1,516,714	-				+0.5
1,516,715	+				-0.9
1,516,722	-				-0.6
1,516,754	+				-1.2
1,516,756	-				+0.8
1,516,756	-				-0.2
1,516,757	+				-0.3
1,516,758	-				+1.1
1,516,759	+				-0.2
1,516,759	+				+0.4
1,516,764	+				+0.2
1,516,782	+				-0.3
1,516,782	+				-0.2
1,516,800	-		MMJJ_RS08240	0.12	-0.7
1,516,800	-		MMJJ_RS08240	0.12	+0.0
1,516,801	+		MMJJ_RS08240	0.12	-0.3
1,516,812	+		MMJJ_RS08240	0.14	+1.2
1,516,813	-		MMJJ_RS08240	0.14	-0.2
1,516,829	+		MMJJ_RS08240	0.17	+0.2
1,516,853	+		MMJJ_RS08240	0.22	-0.1
1,516,915	+		MMJJ_RS08240	0.33	-2.6
1,516,915	+		MMJJ_RS08240	0.33	-0.8
1,516,923	-		MMJJ_RS08240	0.34	+1.0
1,516,923	-		MMJJ_RS08240	0.34	-0.0
1,516,924	+		MMJJ_RS08240	0.35	+0.2
1,516,924	+		MMJJ_RS08240	0.35	+0.2
1,516,924	+		MMJJ_RS08240	0.35	+1.4
1,516,924	+		MMJJ_RS08240	0.35	+0.4
1,516,924	+		MMJJ_RS08240	0.35	+0.7
1,516,924	+		MMJJ_RS08240	0.35	+0.1
1,516,928	-		MMJJ_RS08240	0.35	-0.4
1,516,970	-		MMJJ_RS08240	0.43	+0.0
1,517,004	-		MMJJ_RS08240	0.49	+0.3
1,517,004	-		MMJJ_RS08240	0.49	-0.2
1,517,005	+		MMJJ_RS08240	0.50	+0.1
1,517,024	-		MMJJ_RS08240	0.53	-0.1
1,517,024	-		MMJJ_RS08240	0.53	+1.5
1,517,052	-		MMJJ_RS08240	0.58	+1.0
1,517,054	-		MMJJ_RS08240	0.59	+0.7
1,517,072	-		MMJJ_RS08240	0.62	-0.1
1,517,073	+		MMJJ_RS08240	0.62	-0.4
1,517,083	-		MMJJ_RS08240	0.64	-0.3
1,517,097	+		MMJJ_RS08240	0.66	-0.6
1,517,156	-		MMJJ_RS08240	0.77	+0.4
1,517,170	-		MMJJ_RS08240	0.80	+0.3
1,517,171	+		MMJJ_RS08240	0.80	-0.3
1,517,171	+		MMJJ_RS08240	0.80	-0.5
1,517,173	-		MMJJ_RS08240	0.80	+0.2
1,517,173	-		MMJJ_RS08240	0.80	+0.6
1,517,173	-		MMJJ_RS08240	0.80	-1.3
1,517,175	-		MMJJ_RS08240	0.81	+0.7
1,517,175	-		MMJJ_RS08240	0.81	-2.3
1,517,175	-		MMJJ_RS08240	0.81	+0.1
1,517,175	-		MMJJ_RS08240	0.81	-0.8
1,517,176	+		MMJJ_RS08240	0.81	+0.5
1,517,176	+		MMJJ_RS08240	0.81	-0.1
1,517,176	+		MMJJ_RS08240	0.81	+0.7
1,517,176	+		MMJJ_RS08240	0.81	-0.1
1,517,176	+		MMJJ_RS08240	0.81	+0.5
1,517,197	-		MMJJ_RS08240	0.85	-0.3
1,517,201	-		MMJJ_RS08240	0.86	-0.6
1,517,201	-		MMJJ_RS08240	0.86	-0.7
1,517,202	+		MMJJ_RS08240	0.86	+0.2
1,517,226	-				+0.2
1,517,226	-				+0.1
1,517,238	-				+0.3
1,517,238	-				-0.1
1,517,240	-				+0.3
1,517,240	-				+1.0
1,517,244	+				+0.1
1,517,244	+				+0.4
1,517,244	+				+0.9
1,517,259	+				+0.5
1,517,304	+				+0.3
1,517,304	+				-0.7
1,517,304	+				-0.0
1,517,310	-				-0.4
1,517,310	-				+2.8
1,517,311	+				+0.7
1,517,316	+				+0.1
1,517,316	+				-0.8
1,517,316	+				+0.6
1,517,332	+				+0.4
1,518,609	-		MMJJ_RS08245	0.63	-0.9
1,518,613	+		MMJJ_RS08245	0.63	-2.0
1,519,041	-				+0.8
1,519,123	+		MMJJ_RS08245	0.87	-2.5
1,519,464	-		MMJJ_RS08250	0.12	+0.2
1,519,514	-		MMJJ_RS08250	0.21	-3.2
1,519,547	-		MMJJ_RS08250	0.28	-0.8
1,519,547	-		MMJJ_RS08250	0.28	-3.2
1,519,550	+		MMJJ_RS08250	0.28	-2.8
1,519,553	-		MMJJ_RS08250	0.29	-1.5
1,519,557	-				-1.5
1,519,618	+		MMJJ_RS08250	0.41	-0.8
1,519,627	+		MMJJ_RS08250	0.42	-2.3
1,519,670	-		MMJJ_RS08250	0.50	-3.2
1,519,671	+		MMJJ_RS08250	0.51	-3.1
1,519,671	+		MMJJ_RS08250	0.51	-3.7
1,519,671	+		MMJJ_RS08250	0.51	-1.4
1,519,671	+		MMJJ_RS08250	0.51	-3.9
1,519,699	+		MMJJ_RS08250	0.56	-2.6
1,519,723	+		MMJJ_RS08250	0.60	-0.6
1,519,743	-		MMJJ_RS08250	0.64	-4.0
1,519,752	+		MMJJ_RS08250	0.66	-2.5
1,519,815	-		MMJJ_RS08250	0.77	-3.1
1,519,832	+		MMJJ_RS08250	0.80	-3.6
1,519,857	-		MMJJ_RS08250	0.85	-3.3
1,519,862	+		MMJJ_RS08250	0.86	-4.4
1,519,902	+				-2.6
1,519,905	+				+0.4
1,519,914	+				-0.8
1,519,917	+				-1.0
1,519,919	-				-2.3
1,519,920	+				-3.8
1,519,976	-				-0.2
1,519,976	-				-2.2
1,519,976	-				-1.3
1,519,976	-				-1.6
1,519,976	-				-3.4
1,519,977	+				-2.0
1,519,977	+				-1.8
1,519,978	-				-1.7
1,519,978	-				-1.1
1,519,978	-				-0.5
1,519,979	+				-2.4
1,519,979	+				-2.6
1,519,979	+				-1.4
1,519,979	+				-1.6
1,519,980	-				+0.2
1,519,980	-				-2.9
1,519,980	-				-1.1
1,519,980	-				-1.2
1,519,980	-				-0.2
1,519,980	-				-0.8
1,519,980	-				-4.7
1,519,980	-				-1.5
1,519,981	+				-0.8
1,519,981	+				-1.5
1,519,981	+				-3.4
1,519,981	+				-2.6
1,519,982	-				-1.7
1,519,982	-				-2.0
1,519,982	-				-1.4
1,519,982	-				-0.0
1,519,983	+				-1.9
1,519,983	+				-1.7
1,519,983	+				-1.6
1,519,983	+				-0.4
1,519,985	-				-0.5
1,519,986	+				-1.5
1,519,989	-				-0.7
1,520,002	-				-0.6
1,520,003	+				-2.2
1,520,003	+				-2.0
1,520,003	+				-2.5
1,520,005	-				-2.6
1,520,005	-				-2.8
1,520,005	-				-0.2
1,520,006	+				-2.8
1,520,006	+				-3.1
1,520,006	+				-2.2
1,520,007	-				-2.0
1,520,007	-				-0.5
1,520,007	-				-0.9
1,520,007	-				-0.7
1,520,007	-				-0.4
1,520,008	+				-1.6
1,520,008	+				-1.7
1,520,008	+				-1.1
1,520,008	+				-0.8
1,520,008	+				-1.1
1,520,008	+				-2.1
1,520,009	-				-0.0
1,520,009	-				-0.1
1,520,009	-				+0.0
1,520,009	-				-0.4
1,520,010	+				-0.3
1,520,010	+				-0.1
1,520,011	-				-0.5
1,520,012	+				+0.6
1,520,012	+				+0.4
1,520,105	-				+0.1
1,520,105	-				+0.1
1,520,106	+				+0.1
1,520,114	-		MMJJ_RS08255	0.11	+0.5
1,520,114	-		MMJJ_RS08255	0.11	+0.2
1,520,120	+		MMJJ_RS08255	0.12	-0.7
1,520,120	+		MMJJ_RS08255	0.12	+0.9
1,520,131	+		MMJJ_RS08255	0.14	-0.6
1,520,140	+		MMJJ_RS08255	0.16	-0.2
1,520,170	+		MMJJ_RS08255	0.22	+1.4
1,520,226	+		MMJJ_RS08255	0.32	+0.3
1,520,232	-		MMJJ_RS08255	0.33	-1.7
1,520,232	-		MMJJ_RS08255	0.33	+0.7
1,520,233	+		MMJJ_RS08255	0.34	+0.1
1,520,233	+		MMJJ_RS08255	0.34	+0.0
1,520,233	+		MMJJ_RS08255	0.34	+1.9
1,520,314	+		MMJJ_RS08255	0.49	-0.8
1,520,319	-		MMJJ_RS08255	0.50	-1.9
1,520,320	+		MMJJ_RS08255	0.50	+0.7
1,520,333	-		MMJJ_RS08255	0.52	-0.4
1,520,333	-		MMJJ_RS08255	0.52	-0.1
1,520,333	-		MMJJ_RS08255	0.52	+0.1
1,520,333	-		MMJJ_RS08255	0.52	+0.3
1,520,334	+		MMJJ_RS08255	0.53	+0.8
1,520,334	+		MMJJ_RS08255	0.53	-0.9
1,520,334	+		MMJJ_RS08255	0.53	-0.2
1,520,336	+		MMJJ_RS08255	0.53	+0.9
1,520,336	+		MMJJ_RS08255	0.53	+0.7
1,520,337	-		MMJJ_RS08255	0.53	+0.5
1,520,337	-		MMJJ_RS08255	0.53	-0.2
1,520,337	-		MMJJ_RS08255	0.53	+0.9
1,520,337	-		MMJJ_RS08255	0.53	-0.9
1,520,337	-		MMJJ_RS08255	0.53	-0.3
1,520,337	-		MMJJ_RS08255	0.53	-0.2
1,520,338	+		MMJJ_RS08255	0.53	+0.1
1,520,338	+		MMJJ_RS08255	0.53	-0.1
1,520,338	+		MMJJ_RS08255	0.53	+0.1
1,520,338	+		MMJJ_RS08255	0.53	+0.6
1,520,338	+		MMJJ_RS08255	0.53	-0.2