Experiment: formate McAA lipolic dropout
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04910 and MMJJ_RS04915 are separated by 118 nucleotides MMJJ_RS04915 and MMJJ_RS04920 are separated by 89 nucleotides MMJJ_RS04920 and MMJJ_RS04925 are separated by 14 nucleotides
MMJJ_RS04910: MMJJ_RS04910 - pyridoxal 5'-phosphate synthase lyase subunit PdxS, at 912,913 to 913,812
_RS04910
MMJJ_RS04915: MMJJ_RS04915 - protein-L-isoaspartate O-methyltransferase, at 913,931 to 914,569
_RS04915
MMJJ_RS04920: MMJJ_RS04920 - CBS domain-containing protein, at 914,659 to 915,144
_RS04920
MMJJ_RS04925: MMJJ_RS04925 - cation:proton antiporter, at 915,159 to 916,337
_RS04925
Position (kb) 913
914
915 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 912.960 kb on - strand at 912.963 kb on - strand at 913.475 kb on + strand, within MMJJ_RS04910 at 913.844 kb on + strand at 913.847 kb on + strand at 913.879 kb on - strand at 913.887 kb on - strand at 913.888 kb on + strand at 913.888 kb on + strand at 913.888 kb on + strand at 913.888 kb on + strand at 913.922 kb on - strand at 913.926 kb on - strand at 913.926 kb on - strand at 913.926 kb on - strand at 913.927 kb on + strand at 913.927 kb on + strand at 913.927 kb on + strand at 913.932 kb on - strand at 913.933 kb on + strand at 913.952 kb on - strand at 913.993 kb on - strand at 913.993 kb on - strand at 913.993 kb on - strand at 913.993 kb on - strand at 913.993 kb on - strand at 913.994 kb on + strand at 913.994 kb on + strand at 913.994 kb on + strand at 913.994 kb on + strand at 913.994 kb on + strand at 913.996 kb on - strand, within MMJJ_RS04915 at 913.996 kb on - strand, within MMJJ_RS04915 at 913.997 kb on + strand, within MMJJ_RS04915 at 914.012 kb on + strand, within MMJJ_RS04915 at 914.012 kb on + strand, within MMJJ_RS04915 at 914.012 kb on + strand, within MMJJ_RS04915 at 914.014 kb on + strand, within MMJJ_RS04915 at 914.072 kb on - strand, within MMJJ_RS04915 at 914.072 kb on - strand, within MMJJ_RS04915 at 914.072 kb on - strand, within MMJJ_RS04915 at 914.073 kb on + strand, within MMJJ_RS04915 at 914.121 kb on - strand, within MMJJ_RS04915 at 914.121 kb on - strand, within MMJJ_RS04915 at 914.121 kb on - strand, within MMJJ_RS04915 at 914.121 kb on - strand, within MMJJ_RS04915 at 914.121 kb on - strand, within MMJJ_RS04915 at 914.121 kb on - strand, within MMJJ_RS04915 at 914.121 kb on - strand, within MMJJ_RS04915 at 914.121 kb on - strand, within MMJJ_RS04915 at 914.121 kb on - strand, within MMJJ_RS04915 at 914.121 kb on - strand, within MMJJ_RS04915 at 914.121 kb on - strand, within MMJJ_RS04915 at 914.122 kb on + strand, within MMJJ_RS04915 at 914.122 kb on + strand, within MMJJ_RS04915 at 914.122 kb on + strand, within MMJJ_RS04915 at 914.122 kb on + strand, within MMJJ_RS04915 at 914.122 kb on + strand, within MMJJ_RS04915 at 914.122 kb on + strand, within MMJJ_RS04915 at 914.123 kb on - strand, within MMJJ_RS04915 at 914.123 kb on - strand, within MMJJ_RS04915 at 914.124 kb on + strand, within MMJJ_RS04915 at 914.124 kb on + strand, within MMJJ_RS04915 at 914.134 kb on + strand, within MMJJ_RS04915 at 914.161 kb on - strand, within MMJJ_RS04915 at 914.191 kb on - strand, within MMJJ_RS04915 at 914.192 kb on + strand, within MMJJ_RS04915 at 914.192 kb on + strand, within MMJJ_RS04915 at 914.192 kb on + strand, within MMJJ_RS04915 at 914.192 kb on + strand, within MMJJ_RS04915 at 914.192 kb on + strand, within MMJJ_RS04915 at 914.192 kb on + strand, within MMJJ_RS04915 at 914.257 kb on - strand, within MMJJ_RS04915 at 914.257 kb on - strand, within MMJJ_RS04915 at 914.291 kb on - strand, within MMJJ_RS04915 at 914.291 kb on - strand, within MMJJ_RS04915 at 914.291 kb on - strand, within MMJJ_RS04915 at 914.292 kb on + strand, within MMJJ_RS04915 at 914.292 kb on + strand, within MMJJ_RS04915 at 914.305 kb on + strand, within MMJJ_RS04915 at 914.330 kb on - strand, within MMJJ_RS04915 at 914.370 kb on + strand, within MMJJ_RS04915 at 914.370 kb on + strand, within MMJJ_RS04915 at 914.384 kb on - strand, within MMJJ_RS04915 at 914.385 kb on + strand, within MMJJ_RS04915 at 914.395 kb on - strand, within MMJJ_RS04915 at 914.396 kb on + strand, within MMJJ_RS04915 at 914.418 kb on + strand, within MMJJ_RS04915 at 914.433 kb on - strand, within MMJJ_RS04915 at 914.433 kb on - strand, within MMJJ_RS04915 at 914.434 kb on + strand, within MMJJ_RS04915 at 914.434 kb on + strand, within MMJJ_RS04915 at 914.439 kb on - strand, within MMJJ_RS04915 at 914.440 kb on + strand, within MMJJ_RS04915 at 914.461 kb on - strand, within MMJJ_RS04915 at 914.515 kb on - strand at 914.515 kb on - strand at 914.515 kb on - strand at 914.515 kb on - strand at 914.516 kb on + strand at 914.516 kb on + strand at 914.517 kb on - strand at 914.517 kb on - strand at 914.518 kb on + strand at 914.518 kb on + strand at 914.562 kb on + strand at 914.571 kb on - strand at 914.571 kb on - strand at 914.571 kb on - strand at 914.572 kb on + strand at 914.572 kb on + strand at 914.572 kb on + strand at 914.572 kb on + strand at 914.572 kb on + strand at 914.602 kb on - strand at 914.603 kb on + strand at 914.605 kb on - strand at 914.605 kb on - strand at 914.605 kb on - strand at 914.609 kb on - strand at 914.609 kb on - strand at 914.609 kb on - strand at 914.609 kb on - strand at 914.609 kb on - strand at 914.610 kb on + strand at 914.610 kb on + strand at 914.610 kb on + strand at 914.610 kb on + strand at 914.610 kb on + strand at 914.610 kb on + strand at 914.610 kb on + strand at 914.611 kb on - strand at 914.611 kb on - strand at 914.611 kb on - strand at 914.611 kb on - strand at 914.611 kb on - strand at 914.625 kb on - strand at 914.626 kb on + strand at 914.626 kb on + strand at 914.626 kb on + strand at 914.626 kb on + strand at 914.627 kb on - strand at 914.627 kb on - strand at 914.627 kb on - strand at 914.627 kb on - strand at 914.627 kb on - strand at 914.627 kb on - strand at 914.628 kb on + strand at 914.628 kb on + strand at 914.628 kb on + strand at 914.628 kb on + strand at 914.628 kb on + strand at 914.628 kb on + strand at 914.628 kb on + strand at 914.629 kb on - strand at 914.629 kb on - strand at 914.629 kb on - strand at 914.629 kb on - strand at 914.629 kb on - strand at 914.629 kb on - strand at 914.629 kb on - strand at 914.630 kb on + strand at 914.630 kb on + strand at 914.630 kb on + strand at 914.630 kb on + strand at 914.630 kb on + strand at 914.630 kb on + strand at 914.630 kb on + strand at 914.630 kb on + strand at 914.656 kb on - strand at 914.656 kb on - strand at 914.657 kb on + strand at 914.657 kb on + strand at 914.657 kb on + strand at 914.657 kb on + strand at 914.657 kb on + strand at 914.659 kb on + strand at 914.689 kb on - strand at 914.694 kb on - strand at 914.694 kb on - strand at 914.695 kb on + strand at 914.701 kb on + strand at 914.714 kb on - strand, within MMJJ_RS04920 at 914.714 kb on - strand, within MMJJ_RS04920 at 914.714 kb on - strand, within MMJJ_RS04920 at 914.714 kb on - strand, within MMJJ_RS04920 at 914.714 kb on - strand, within MMJJ_RS04920 at 914.715 kb on + strand, within MMJJ_RS04920 at 914.715 kb on + strand, within MMJJ_RS04920 at 914.715 kb on + strand, within MMJJ_RS04920 at 914.715 kb on + strand, within MMJJ_RS04920 at 914.717 kb on - strand, within MMJJ_RS04920 at 914.718 kb on + strand, within MMJJ_RS04920 at 914.718 kb on + strand, within MMJJ_RS04920 at 914.718 kb on + strand, within MMJJ_RS04920 at 914.727 kb on + strand, within MMJJ_RS04920 at 914.750 kb on + strand, within MMJJ_RS04920 at 914.750 kb on + strand, within MMJJ_RS04920 at 914.750 kb on + strand, within MMJJ_RS04920 at 914.750 kb on + strand, within MMJJ_RS04920 at 914.762 kb on - strand, within MMJJ_RS04920 at 914.767 kb on + strand, within MMJJ_RS04920 at 914.767 kb on + strand, within MMJJ_RS04920 at 914.783 kb on - strand, within MMJJ_RS04920 at 914.808 kb on - strand, within MMJJ_RS04920 at 914.811 kb on + strand, within MMJJ_RS04920 at 914.862 kb on + strand, within MMJJ_RS04920 at 914.892 kb on - strand, within MMJJ_RS04920 at 914.899 kb on - strand, within MMJJ_RS04920 at 914.899 kb on - strand, within MMJJ_RS04920 at 914.900 kb on + strand, within MMJJ_RS04920 at 914.903 kb on - strand, within MMJJ_RS04920 at 914.903 kb on - strand, within MMJJ_RS04920 at 914.903 kb on - strand, within MMJJ_RS04920 at 914.904 kb on + strand, within MMJJ_RS04920 at 914.904 kb on + strand, within MMJJ_RS04920 at 914.904 kb on + strand, within MMJJ_RS04920 at 914.904 kb on + strand, within MMJJ_RS04920 at 914.904 kb on + strand, within MMJJ_RS04920 at 914.986 kb on + strand, within MMJJ_RS04920 at 914.994 kb on - strand, within MMJJ_RS04920 at 914.995 kb on + strand, within MMJJ_RS04920 at 915.000 kb on - strand, within MMJJ_RS04920 at 915.000 kb on - strand, within MMJJ_RS04920 at 915.034 kb on - strand, within MMJJ_RS04920 at 915.034 kb on - strand, within MMJJ_RS04920 at 915.035 kb on + strand, within MMJJ_RS04920 at 915.059 kb on - strand, within MMJJ_RS04920 at 915.059 kb on - strand, within MMJJ_RS04920 at 915.089 kb on - strand, within MMJJ_RS04920 at 915.119 kb on - strand at 915.147 kb on + strand at 915.167 kb on - strand at 915.168 kb on + strand at 915.168 kb on + strand at 915.168 kb on + strand at 915.182 kb on - strand at 915.182 kb on - strand at 915.182 kb on - strand at 915.209 kb on - strand at 915.210 kb on + strand at 915.233 kb on - strand at 915.239 kb on + strand at 915.293 kb on + strand, within MMJJ_RS04925 at 915.297 kb on - strand, within MMJJ_RS04925 at 915.307 kb on - strand, within MMJJ_RS04925 at 915.311 kb on + strand, within MMJJ_RS04925 at 915.505 kb on + strand, within MMJJ_RS04925
Per-strain Table
Position Strand Gene LocusTag Fraction formate McAA lipolic dropout remove 912,960 - -1.8 912,963 - +1.6 913,475 + MMJJ_RS04910 0.62 -2.4 913,844 + -2.2 913,847 + -1.7 913,879 - -2.5 913,887 - -0.1 913,888 + -0.3 913,888 + -0.4 913,888 + -0.7 913,888 + +1.5 913,922 - +0.1 913,926 - +0.6 913,926 - -0.1 913,926 - +2.2 913,927 + +0.0 913,927 + +0.6 913,927 + +0.9 913,932 - +0.0 913,933 + -0.2 913,952 - +0.1 913,993 - -0.4 913,993 - +1.1 913,993 - -0.1 913,993 - -2.0 913,993 - -0.7 913,994 + +0.2 913,994 + +0.4 913,994 + +1.1 913,994 + +0.1 913,994 + -0.7 913,996 - MMJJ_RS04915 0.10 -1.0 913,996 - MMJJ_RS04915 0.10 -0.3 913,997 + MMJJ_RS04915 0.10 +2.3 914,012 + MMJJ_RS04915 0.13 +0.3 914,012 + MMJJ_RS04915 0.13 -0.7 914,012 + MMJJ_RS04915 0.13 +1.3 914,014 + MMJJ_RS04915 0.13 -0.5 914,072 - MMJJ_RS04915 0.22 +0.1 914,072 - MMJJ_RS04915 0.22 +1.2 914,072 - MMJJ_RS04915 0.22 +0.9 914,073 + MMJJ_RS04915 0.22 +1.1 914,121 - MMJJ_RS04915 0.30 -0.8 914,121 - MMJJ_RS04915 0.30 -0.3 914,121 - MMJJ_RS04915 0.30 -0.4 914,121 - MMJJ_RS04915 0.30 +0.1 914,121 - MMJJ_RS04915 0.30 +1.1 914,121 - MMJJ_RS04915 0.30 -0.1 914,121 - MMJJ_RS04915 0.30 +0.7 914,121 - MMJJ_RS04915 0.30 -0.9 914,121 - MMJJ_RS04915 0.30 +0.2 914,121 - MMJJ_RS04915 0.30 -0.0 914,121 - MMJJ_RS04915 0.30 -1.6 914,122 + MMJJ_RS04915 0.30 +0.4 914,122 + MMJJ_RS04915 0.30 -0.4 914,122 + MMJJ_RS04915 0.30 +2.0 914,122 + MMJJ_RS04915 0.30 -2.0 914,122 + MMJJ_RS04915 0.30 +0.8 914,122 + MMJJ_RS04915 0.30 +0.4 914,123 - MMJJ_RS04915 0.30 +0.8 914,123 - MMJJ_RS04915 0.30 +0.7 914,124 + MMJJ_RS04915 0.30 +0.0 914,124 + MMJJ_RS04915 0.30 -0.3 914,134 + MMJJ_RS04915 0.32 -0.5 914,161 - MMJJ_RS04915 0.36 +0.8 914,191 - MMJJ_RS04915 0.41 -0.2 914,192 + MMJJ_RS04915 0.41 -0.1 914,192 + MMJJ_RS04915 0.41 -0.2 914,192 + MMJJ_RS04915 0.41 +1.6 914,192 + MMJJ_RS04915 0.41 -0.0 914,192 + MMJJ_RS04915 0.41 -0.3 914,192 + MMJJ_RS04915 0.41 +0.2 914,257 - MMJJ_RS04915 0.51 -0.2 914,257 - MMJJ_RS04915 0.51 +1.1 914,291 - MMJJ_RS04915 0.56 +0.5 914,291 - MMJJ_RS04915 0.56 +0.8 914,291 - MMJJ_RS04915 0.56 +1.2 914,292 + MMJJ_RS04915 0.56 +0.3 914,292 + MMJJ_RS04915 0.56 +0.9 914,305 + MMJJ_RS04915 0.59 +0.9 914,330 - MMJJ_RS04915 0.62 -0.1 914,370 + MMJJ_RS04915 0.69 +0.6 914,370 + MMJJ_RS04915 0.69 -0.4 914,384 - MMJJ_RS04915 0.71 +0.2 914,385 + MMJJ_RS04915 0.71 +0.8 914,395 - MMJJ_RS04915 0.73 +0.5 914,396 + MMJJ_RS04915 0.73 +0.5 914,418 + MMJJ_RS04915 0.76 +0.8 914,433 - MMJJ_RS04915 0.79 -0.2 914,433 - MMJJ_RS04915 0.79 -0.6 914,434 + MMJJ_RS04915 0.79 +0.3 914,434 + MMJJ_RS04915 0.79 +0.9 914,439 - MMJJ_RS04915 0.79 +0.6 914,440 + MMJJ_RS04915 0.80 -1.0 914,461 - MMJJ_RS04915 0.83 +0.5 914,515 - -0.5 914,515 - +0.7 914,515 - +0.3 914,515 - +1.1 914,516 + +0.6 914,516 + +1.4 914,517 - -1.7 914,517 - +0.1 914,518 + +0.2 914,518 + +0.0 914,562 + +0.0 914,571 - -0.7 914,571 - +1.5 914,571 - +0.2 914,572 + +0.2 914,572 + +0.4 914,572 + -0.1 914,572 + -0.2 914,572 + -0.1 914,602 - +0.6 914,603 + -0.7 914,605 - +0.1 914,605 - -0.1 914,605 - -1.6 914,609 - -0.1 914,609 - +0.2 914,609 - -0.1 914,609 - +1.0 914,609 - +0.3 914,610 + -0.3 914,610 + -0.5 914,610 + +0.5 914,610 + -2.5 914,610 + -0.2 914,610 + +1.1 914,610 + -0.2 914,611 - -0.1 914,611 - -0.2 914,611 - -0.0 914,611 - +0.1 914,611 - -0.7 914,625 - -0.6 914,626 + +0.7 914,626 + +0.5 914,626 + +2.2 914,626 + -1.0 914,627 - -0.3 914,627 - +1.2 914,627 - -0.2 914,627 - +0.3 914,627 - -0.5 914,627 - -1.8 914,628 + +0.4 914,628 + -0.6 914,628 + -0.4 914,628 + +0.7 914,628 + -0.7 914,628 + +0.1 914,628 + +0.0 914,629 - -0.2 914,629 - +1.0 914,629 - -0.1 914,629 - +0.2 914,629 - -0.2 914,629 - -0.1 914,629 - -0.9 914,630 + +0.4 914,630 + -0.2 914,630 + -0.0 914,630 + -0.7 914,630 + -0.1 914,630 + +0.8 914,630 + -0.2 914,630 + +0.8 914,656 - -0.8 914,656 - -0.2 914,657 + -0.6 914,657 + +0.0 914,657 + -1.0 914,657 + -2.3 914,657 + -0.2 914,659 + +0.4 914,689 - -0.2 914,694 - +0.5 914,694 - -0.2 914,695 + +1.0 914,701 + +0.7 914,714 - MMJJ_RS04920 0.11 +0.5 914,714 - MMJJ_RS04920 0.11 -2.8 914,714 - MMJJ_RS04920 0.11 -1.2 914,714 - MMJJ_RS04920 0.11 -2.2 914,714 - MMJJ_RS04920 0.11 +0.3 914,715 + MMJJ_RS04920 0.12 +0.3 914,715 + MMJJ_RS04920 0.12 -2.0 914,715 + MMJJ_RS04920 0.12 -0.4 914,715 + MMJJ_RS04920 0.12 -0.7 914,717 - MMJJ_RS04920 0.12 -1.5 914,718 + MMJJ_RS04920 0.12 +0.3 914,718 + MMJJ_RS04920 0.12 -0.3 914,718 + MMJJ_RS04920 0.12 -0.4 914,727 + MMJJ_RS04920 0.14 -0.1 914,750 + MMJJ_RS04920 0.19 +0.3 914,750 + MMJJ_RS04920 0.19 +1.3 914,750 + MMJJ_RS04920 0.19 +0.1 914,750 + MMJJ_RS04920 0.19 -0.8 914,762 - MMJJ_RS04920 0.21 +0.4 914,767 + MMJJ_RS04920 0.22 -0.4 914,767 + MMJJ_RS04920 0.22 +0.4 914,783 - MMJJ_RS04920 0.26 +0.6 914,808 - MMJJ_RS04920 0.31 +0.4 914,811 + MMJJ_RS04920 0.31 +1.3 914,862 + MMJJ_RS04920 0.42 -0.5 914,892 - MMJJ_RS04920 0.48 -0.5 914,899 - MMJJ_RS04920 0.49 -0.6 914,899 - MMJJ_RS04920 0.49 +2.3 914,900 + MMJJ_RS04920 0.50 -0.8 914,903 - MMJJ_RS04920 0.50 +0.1 914,903 - MMJJ_RS04920 0.50 -0.1 914,903 - MMJJ_RS04920 0.50 -0.5 914,904 + MMJJ_RS04920 0.50 +1.0 914,904 + MMJJ_RS04920 0.50 -1.0 914,904 + MMJJ_RS04920 0.50 +1.2 914,904 + MMJJ_RS04920 0.50 +0.2 914,904 + MMJJ_RS04920 0.50 +0.1 914,986 + MMJJ_RS04920 0.67 +0.5 914,994 - MMJJ_RS04920 0.69 -0.6 914,995 + MMJJ_RS04920 0.69 +2.0 915,000 - MMJJ_RS04920 0.70 -0.6 915,000 - MMJJ_RS04920 0.70 +0.5 915,034 - MMJJ_RS04920 0.77 +0.8 915,034 - MMJJ_RS04920 0.77 -0.2 915,035 + MMJJ_RS04920 0.77 -0.3 915,059 - MMJJ_RS04920 0.82 -0.2 915,059 - MMJJ_RS04920 0.82 +0.2 915,089 - MMJJ_RS04920 0.88 +0.5 915,119 - +0.1 915,147 + +0.1 915,167 - +0.3 915,168 + +0.4 915,168 + -0.4 915,168 + -0.1 915,182 - -0.2 915,182 - +0.3 915,182 - -0.5 915,209 - +0.5 915,210 + +0.2 915,233 - -0.5 915,239 + +0.3 915,293 + MMJJ_RS04925 0.11 -0.6 915,297 - MMJJ_RS04925 0.12 +1.6 915,307 - MMJJ_RS04925 0.13 -1.0 915,311 + MMJJ_RS04925 0.13 -0.0 915,505 + MMJJ_RS04925 0.29 -0.2
Or see this region's nucleotide sequence