Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17425

Experiment: R2A with Cobalt chloride 0.15625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Cobalt chloride 0.15625 mM
3,807,511	-		LRK54_RS17420	0.37	+0.4
3,807,531	+		LRK54_RS17420	0.38	-0.4
3,807,531	+		LRK54_RS17420	0.38	+0.3
3,807,531	+		LRK54_RS17420	0.38	-0.5
3,807,531	+		LRK54_RS17420	0.38	+0.5
3,807,531	+		LRK54_RS17420	0.38	-0.8
3,807,531	+		LRK54_RS17420	0.38	-0.6
3,807,531	+		LRK54_RS17420	0.38	-0.6
3,807,531	+		LRK54_RS17420	0.38	+0.2
3,807,531	+		LRK54_RS17420	0.38	-0.1
3,807,531	+		LRK54_RS17420	0.38	-1.1
3,807,531	+		LRK54_RS17420	0.38	+0.3
3,807,532	-		LRK54_RS17420	0.38	-1.3
3,807,532	-		LRK54_RS17420	0.38	-2.0
3,807,532	-		LRK54_RS17420	0.38	-0.7
3,807,532	-		LRK54_RS17420	0.38	-0.8
3,807,532	-		LRK54_RS17420	0.38	-1.5
3,807,532	-		LRK54_RS17420	0.38	-1.4
3,807,532	-		LRK54_RS17420	0.38	-1.4
3,807,532	-		LRK54_RS17420	0.38	+1.2
3,807,532	-		LRK54_RS17420	0.38	-1.9
3,807,532	-		LRK54_RS17420	0.38	+0.1
3,807,532	-		LRK54_RS17420	0.38	-1.2
3,807,532	-		LRK54_RS17420	0.38	-1.4
3,807,532	-		LRK54_RS17420	0.38	-2.2
3,807,532	-		LRK54_RS17420	0.38	-0.2
3,807,532	-		LRK54_RS17420	0.38	-0.1
3,807,532	-		LRK54_RS17420	0.38	-0.8
3,807,939	+		LRK54_RS17420	0.67	+0.2
3,807,939	+		LRK54_RS17420	0.67	-0.5
3,807,939	+		LRK54_RS17420	0.67	+0.8
3,807,939	+		LRK54_RS17420	0.67	-1.0
3,807,939	+		LRK54_RS17420	0.67	-0.2
3,807,940	-		LRK54_RS17420	0.67	-1.2
3,807,940	-		LRK54_RS17420	0.67	-1.7
3,807,940	-		LRK54_RS17420	0.67	-2.2
3,807,940	-		LRK54_RS17420	0.67	-1.4
3,807,976	+		LRK54_RS17420	0.70	-2.3
3,807,976	+		LRK54_RS17420	0.70	-1.0
3,807,976	+		LRK54_RS17420	0.70	-1.2
3,807,977	-		LRK54_RS17420	0.70	+0.8
3,808,270	-				-0.6
3,808,270	-				-1.6
3,808,446	+				+0.9
3,808,446	+				+0.2
3,808,447	-				+1.8
3,808,490	-				-2.0
3,808,490	-				-1.3
3,809,723	+				-0.6
3,809,723	+				+0.8
3,809,723	+				-1.5
3,809,723	+				-1.6
3,809,723	+				+0.3
3,809,723	+				+1.8
3,809,723	+				-0.1
3,809,723	+				-0.7
3,809,723	+				-0.8
3,809,723	+				+0.8
3,809,723	+				-0.5
3,809,723	+				-0.8
3,809,723	+				+1.2
3,809,723	+				-0.2
3,809,723	+				+0.2
3,809,723	+				+0.2
3,809,723	+				+2.8
3,809,723	+				-0.9
3,809,723	+				-0.8
3,809,723	+				-0.8
3,809,723	+				-0.2
3,809,723	+				+0.8
3,809,723	+				+0.4
3,809,723	+				-2.2
3,809,723	+				-1.6
3,809,723	+				+0.2
3,809,723	+				-0.4
3,809,723	+				-2.0
3,809,723	+				-0.7
3,809,723	+				+0.4
3,809,723	+				+0.4
3,809,723	+				+0.4
3,809,723	+				-1.3
3,809,723	+				-0.2
3,809,724	-				-2.2
3,809,724	-				-0.7
3,809,724	-				-0.4
3,809,724	-				+0.4
3,809,724	-				-1.1
3,809,724	-				-0.1
3,809,724	-				+0.4
3,809,724	-				-1.2
3,809,724	-				-2.1
3,809,724	-				+2.4
3,809,724	-				-2.2
3,809,724	-				+0.8
3,809,724	-				+0.4
3,809,724	-				+0.6
3,809,724	-				-1.5
3,809,724	-				+0.4
3,809,724	-				-2.7
3,809,724	-				-0.7
3,809,724	-				+1.2
3,809,724	-				-0.3
3,809,724	-				+0.2
3,809,724	-				+0.2
3,809,724	-				-1.1
3,809,724	-				+0.2
3,809,724	-				-1.6
3,809,724	-				-0.4
3,809,724	-				-0.2
3,809,724	-				+0.4
3,809,724	-				+0.2
3,809,724	-				-1.6
3,809,724	-				+1.8
3,809,724	-				-1.7
3,809,724	-				-1.8
3,809,724	-				+1.5
3,809,724	-				+0.8
3,809,756	+				+1.8
3,809,756	+				-0.7
3,809,756	+				+2.8
3,809,756	+				+0.5
3,809,756	+				-0.7
3,809,853	+				-2.0
3,809,853	+				-0.7
3,809,853	+				+0.2
3,809,853	+				+1.2
3,809,853	+				+1.4
3,809,853	+				-1.3
3,809,853	+				+2.8
3,809,853	+				-2.2
3,809,853	+				-0.2
3,809,853	+				-1.9
3,809,853	+				-0.4
3,809,853	+				+1.2
3,809,853	+				-0.1
3,809,853	+				-1.3
3,809,853	+				-1.2
3,809,854	-				-0.2
3,809,854	-				+1.8
3,809,854	-				-0.9
3,809,854	-				+0.2
3,809,854	-				-0.6
3,809,854	-				+0.8
3,809,854	-				-1.9
3,809,854	-				-0.4
3,809,854	-				+0.2
3,809,854	-				-0.1
3,809,854	-				-2.2
3,809,854	-				+0.8
3,809,854	-				+1.8
3,809,854	-				-1.6
3,809,854	-				+0.4
3,809,931	+		LRK54_RS17430	0.13	-0.8
3,809,931	+		LRK54_RS17430	0.13	+0.7
3,809,931	+		LRK54_RS17430	0.13	-1.6
3,809,931	+		LRK54_RS17430	0.13	-0.1
3,809,931	+		LRK54_RS17430	0.13	-1.2
3,809,931	+		LRK54_RS17430	0.13	-0.2
3,809,931	+		LRK54_RS17430	0.13	+2.2
3,809,931	+		LRK54_RS17430	0.13	-2.7
3,809,931	+		LRK54_RS17430	0.13	-2.0
3,809,931	+		LRK54_RS17430	0.13	-0.2
3,809,931	+		LRK54_RS17430	0.13	-2.1
3,809,931	+		LRK54_RS17430	0.13	+2.8
3,809,931	+		LRK54_RS17430	0.13	-3.3
3,809,931	+		LRK54_RS17430	0.13	-0.6
3,809,931	+		LRK54_RS17430	0.13	-2.2
3,809,932	-		LRK54_RS17430	0.13	-0.2
3,809,932	-		LRK54_RS17430	0.13	-1.0
3,809,932	-		LRK54_RS17430	0.13	+0.4
3,809,932	-		LRK54_RS17430	0.13	-0.1
3,809,932	-		LRK54_RS17430	0.13	+0.3
3,809,932	-		LRK54_RS17430	0.13	+2.2
3,809,932	-		LRK54_RS17430	0.13	-1.2
3,809,932	-		LRK54_RS17430	0.13	+0.8
3,809,932	-		LRK54_RS17430	0.13	-0.6
3,809,932	-		LRK54_RS17430	0.13	+2.8
3,809,932	-		LRK54_RS17430	0.13	+0.4
3,809,932	-		LRK54_RS17430	0.13	-1.5
3,809,932	-		LRK54_RS17430	0.13	-1.1
3,809,932	-		LRK54_RS17430	0.13	-0.6
3,809,932	-		LRK54_RS17430	0.13	-1.1
3,809,932	-		LRK54_RS17430	0.13	+0.8
3,809,932	-		LRK54_RS17430	0.13	-1.1
3,809,932	-		LRK54_RS17430	0.13	-3.2
3,809,991	+		LRK54_RS17430	0.18	+0.8
3,809,991	+		LRK54_RS17430	0.18	+1.2
3,809,991	+		LRK54_RS17430	0.18	+1.2
3,809,992	-		LRK54_RS17430	0.18	-0.1
3,809,992	-		LRK54_RS17430	0.18	-0.2
3,809,992	-		LRK54_RS17430	0.18	-1.3
3,809,992	-		LRK54_RS17430	0.18	-2.0
3,809,992	-		LRK54_RS17430	0.18	+0.2
3,809,992	-		LRK54_RS17430	0.18	-2.3
3,809,992	-		LRK54_RS17430	0.18	-2.5
3,809,992	-		LRK54_RS17430	0.18	+2.8
3,810,015	+		LRK54_RS17430	0.19	-2.0
3,810,015	+		LRK54_RS17430	0.19	-0.7
3,810,015	+		LRK54_RS17430	0.19	-0.7
3,810,015	+		LRK54_RS17430	0.19	-0.2
3,810,015	+		LRK54_RS17430	0.19	+0.8
3,810,015	+		LRK54_RS17430	0.19	+1.2
3,810,015	+		LRK54_RS17430	0.19	-2.2
3,810,015	+		LRK54_RS17430	0.19	-1.0
3,810,015	+		LRK54_RS17430	0.19	-1.5
3,810,015	+		LRK54_RS17430	0.19	+1.8
3,810,015	+		LRK54_RS17430	0.19	-0.4
3,810,015	+		LRK54_RS17430	0.19	+0.2
3,810,015	+		LRK54_RS17430	0.19	-2.7
3,810,015	+		LRK54_RS17430	0.19	-0.4
3,810,015	+		LRK54_RS17430	0.19	-1.2
3,810,015	+		LRK54_RS17430	0.19	+1.8
3,810,015	+		LRK54_RS17430	0.19	-1.5
3,810,015	+		LRK54_RS17430	0.19	-1.1
3,810,015	+		LRK54_RS17430	0.19	+0.8
3,810,015	+		LRK54_RS17430	0.19	-0.2
3,810,015	+		LRK54_RS17430	0.19	+1.8
3,810,015	+		LRK54_RS17430	0.19	+0.4
3,810,016	-		LRK54_RS17430	0.19	+1.8
3,810,016	-		LRK54_RS17430	0.19	-0.2
3,810,016	-		LRK54_RS17430	0.19	-0.1
3,810,016	-		LRK54_RS17430	0.19	+0.4
3,810,016	-		LRK54_RS17430	0.19	-1.6
3,810,016	-		LRK54_RS17430	0.19	-2.0
3,810,016	-		LRK54_RS17430	0.19	+2.8
3,810,016	-		LRK54_RS17430	0.19	+1.2
3,810,016	-		LRK54_RS17430	0.19	+0.4
3,810,016	-		LRK54_RS17430	0.19	+0.8
3,810,016	-		LRK54_RS17430	0.19	-0.1
3,810,016	-		LRK54_RS17430	0.19	-1.2
3,810,016	-		LRK54_RS17430	0.19	+0.4
3,810,016	-		LRK54_RS17430	0.19	-2.2
3,810,016	-		LRK54_RS17430	0.19	+2.8
3,810,016	-		LRK54_RS17430	0.19	-0.3
3,810,016	-		LRK54_RS17430	0.19	-1.3
3,810,016	-		LRK54_RS17430	0.19	-0.4
3,810,016	-		LRK54_RS17430	0.19	-0.2
3,810,016	-		LRK54_RS17430	0.19	-1.7
3,810,016	-		LRK54_RS17430	0.19	+0.8
3,810,016	-		LRK54_RS17430	0.19	+0.8
3,810,016	-		LRK54_RS17430	0.19	-2.0
3,810,016	-		LRK54_RS17430	0.19	+1.2
3,810,016	-		LRK54_RS17430	0.19	+0.8
3,810,016	-		LRK54_RS17430	0.19	-0.4
3,810,016	-		LRK54_RS17430	0.19	-2.3
3,810,016	-		LRK54_RS17430	0.19	-1.9
3,810,016	-		LRK54_RS17430	0.19	-2.4
3,810,156	+		LRK54_RS17430	0.29	+0.2
3,810,157	-		LRK54_RS17430	0.29	-0.8
3,810,157	-		LRK54_RS17430	0.29	-0.8
3,810,157	-		LRK54_RS17430	0.29	+0.4
3,810,403	+		LRK54_RS17430	0.47	-1.4
3,810,403	+		LRK54_RS17430	0.47	+0.8
3,810,405	+		LRK54_RS17430	0.47	-0.4
3,810,405	+		LRK54_RS17430	0.47	-2.4
3,810,405	+		LRK54_RS17430	0.47	+1.8
3,810,405	+		LRK54_RS17430	0.47	-1.5
3,810,405	+		LRK54_RS17430	0.47	-2.0
3,810,405	+		LRK54_RS17430	0.47	-0.8
3,810,405	+		LRK54_RS17430	0.47	-0.5
3,810,405	+		LRK54_RS17430	0.47	-1.6
3,810,405	+		LRK54_RS17430	0.47	+0.8
3,810,405	+		LRK54_RS17430	0.47	-2.1
3,810,405	+		LRK54_RS17430	0.47	-0.3
3,810,405	+		LRK54_RS17430	0.47	+2.8
3,810,405	+		LRK54_RS17430	0.47	-1.6
3,810,405	+		LRK54_RS17430	0.47	-2.5
3,810,405	+		LRK54_RS17430	0.47	+0.2
3,810,405	+		LRK54_RS17430	0.47	-0.8
3,810,405	+		LRK54_RS17430	0.47	-2.4
3,810,405	+		LRK54_RS17430	0.47	+0.8
3,810,405	+		LRK54_RS17430	0.47	-0.4
3,810,405	+		LRK54_RS17430	0.47	-0.8
3,810,405	+		LRK54_RS17430	0.47	-1.2
3,810,405	+		LRK54_RS17430	0.47	+1.8
3,810,405	+		LRK54_RS17430	0.47	-1.9
3,810,405	+		LRK54_RS17430	0.47	-0.5
3,810,405	+		LRK54_RS17430	0.47	-0.4
3,810,405	+		LRK54_RS17430	0.47	+0.4
3,810,406	-		LRK54_RS17430	0.47	-1.3
3,810,406	-		LRK54_RS17430	0.47	-0.2
3,810,406	-		LRK54_RS17430	0.47	+0.8
3,810,406	-		LRK54_RS17430	0.47	+0.8
3,810,406	-		LRK54_RS17430	0.47	-0.2
3,810,406	-		LRK54_RS17430	0.47	+1.2
3,810,406	-		LRK54_RS17430	0.47	+0.0
3,810,406	-		LRK54_RS17430	0.47	+0.8
3,810,406	-		LRK54_RS17430	0.47	-0.7
3,810,406	-		LRK54_RS17430	0.47	-0.5
3,810,406	-		LRK54_RS17430	0.47	-1.2
3,810,406	-		LRK54_RS17430	0.47	-1.0
3,810,406	-		LRK54_RS17430	0.47	+0.2
3,810,406	-		LRK54_RS17430	0.47	-1.8
3,810,406	-		LRK54_RS17430	0.47	+0.0
3,810,406	-		LRK54_RS17430	0.47	-1.0
3,810,406	-		LRK54_RS17430	0.47	+1.8
3,810,406	-		LRK54_RS17430	0.47	+0.4
3,810,406	-		LRK54_RS17430	0.47	-2.7
3,810,406	-		LRK54_RS17430	0.47	-0.7
3,810,406	-		LRK54_RS17430	0.47	-0.7
3,810,406	-		LRK54_RS17430	0.47	+1.8
3,810,406	-		LRK54_RS17430	0.47	-2.4
3,810,406	-		LRK54_RS17430	0.47	+0.8
3,810,406	-		LRK54_RS17430	0.47	-0.6
3,810,406	-		LRK54_RS17430	0.47	-0.1
3,810,406	-		LRK54_RS17430	0.47	-1.2
3,810,406	-		LRK54_RS17430	0.47	+1.2
3,810,406	-		LRK54_RS17430	0.47	-1.0
3,810,406	-		LRK54_RS17430	0.47	-0.4
3,810,438	+		LRK54_RS17430	0.49	-1.6
3,810,438	+		LRK54_RS17430	0.49	-1.0
3,810,438	+		LRK54_RS17430	0.49	+1.2
3,810,439	-		LRK54_RS17430	0.49	-1.2
3,810,439	-		LRK54_RS17430	0.49	+1.2