Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06425

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS06420 and BPHYT_RS06425 are separated by 63 nucleotidesBPHYT_RS06425 and BPHYT_RS06430 are separated by 49 nucleotides BPHYT_RS06420: BPHYT_RS06420 - oxidoreductase, at 1,461,259 to 1,462,038 _RS06420 BPHYT_RS06425: BPHYT_RS06425 - methylglyoxal synthase, at 1,462,102 to 1,462,491 _RS06425 BPHYT_RS06430: BPHYT_RS06430 - quinone oxidoreductase, at 1,462,541 to 1,463,515 _RS06430 Position (kb) 1462 1463Strain fitness (log2 ratio) -1 0 1 2at 1461.190 kb on + strandat 1461.200 kb on - strandat 1461.982 kb on + strandat 1461.983 kb on - strandat 1461.983 kb on - strandat 1462.096 kb on + strandat 1462.096 kb on + strandat 1462.097 kb on - strandat 1462.097 kb on - strandat 1462.137 kb on + strandat 1462.150 kb on - strand, within BPHYT_RS06425at 1462.664 kb on + strand, within BPHYT_RS06430at 1462.664 kb on + strand, within BPHYT_RS06430at 1462.664 kb on + strand, within BPHYT_RS06430at 1462.665 kb on - strand, within BPHYT_RS06430at 1462.665 kb on - strand, within BPHYT_RS06430at 1462.665 kb on - strand, within BPHYT_RS06430at 1462.677 kb on - strand, within BPHYT_RS06430at 1462.925 kb on + strand, within BPHYT_RS06430at 1462.925 kb on + strand, within BPHYT_RS06430at 1462.925 kb on + strand, within BPHYT_RS06430at 1462.925 kb on + strand, within BPHYT_RS06430at 1462.926 kb on - strand, within BPHYT_RS06430at 1462.944 kb on - strand, within BPHYT_RS06430at 1463.111 kb on + strand, within BPHYT_RS06430at 1463.178 kb on - strand, within BPHYT_RS06430at 1463.178 kb on - strand, within BPHYT_RS06430at 1463.343 kb on - strand, within BPHYT_RS06430

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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1,461,190 + +2.5
1,461,200 - -0.2
1,461,982 + +0.4
1,461,983 - -0.5
1,461,983 - +0.9
1,462,096 + -1.4
1,462,096 + +0.3
1,462,097 - +1.0
1,462,097 - +1.2
1,462,137 + -0.9
1,462,150 - BPHYT_RS06425 0.12 -0.3
1,462,664 + BPHYT_RS06430 0.13 +1.1
1,462,664 + BPHYT_RS06430 0.13 -0.2
1,462,664 + BPHYT_RS06430 0.13 +0.3
1,462,665 - BPHYT_RS06430 0.13 +0.1
1,462,665 - BPHYT_RS06430 0.13 +0.1
1,462,665 - BPHYT_RS06430 0.13 +0.4
1,462,677 - BPHYT_RS06430 0.14 +1.1
1,462,925 + BPHYT_RS06430 0.39 -0.2
1,462,925 + BPHYT_RS06430 0.39 +0.3
1,462,925 + BPHYT_RS06430 0.39 -0.7
1,462,925 + BPHYT_RS06430 0.39 -0.0
1,462,926 - BPHYT_RS06430 0.39 -0.2
1,462,944 - BPHYT_RS06430 0.41 +1.9
1,463,111 + BPHYT_RS06430 0.58 +0.2
1,463,178 - BPHYT_RS06430 0.65 -0.5
1,463,178 - BPHYT_RS06430 0.65 +1.3
1,463,343 - BPHYT_RS06430 0.82 +0.0

Or see this region's nucleotide sequence