Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS14495

Experiment: Recovery broth with Tiamulin 1e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Tiamulin 1e-04 mM
1,025,667	-		BBR_RS14490	0.38	+1.3
1,025,681	-		BBR_RS14490	0.39	+0.2
1,025,683	-		BBR_RS14490	0.39	-0.7
1,025,698	-		BBR_RS14490	0.41	+0.1
1,025,726	+		BBR_RS14490	0.43	+0.2
1,025,739	-		BBR_RS14490	0.44	+0.0
1,025,777	+		BBR_RS14490	0.47	+0.8
1,025,785	-		BBR_RS14490	0.47	-0.4
1,025,787	+		BBR_RS14490	0.47	+0.7
1,025,787	+		BBR_RS14490	0.47	-0.0
1,025,851	+		BBR_RS14490	0.52	+0.4
1,025,883	+		BBR_RS14490	0.55	-1.0
1,025,915	-		BBR_RS14490	0.57	+0.1
1,025,944	-		BBR_RS14490	0.59	+0.7
1,025,949	-		BBR_RS14490	0.60	-1.2
1,025,952	-		BBR_RS14490	0.60	+0.8
1,025,960	-		BBR_RS14490	0.61	+0.9
1,025,960	-		BBR_RS14490	0.61	-0.0
1,026,021	-		BBR_RS14490	0.65	-0.0
1,026,031	-		BBR_RS14490	0.66	-1.0
1,026,035	-		BBR_RS14490	0.66	-0.1
1,026,037	-		BBR_RS14490	0.67	+0.4
1,026,056	-		BBR_RS14490	0.68	+0.2
1,026,133	+		BBR_RS14490	0.74	+0.8
1,026,133	+		BBR_RS14490	0.74	-0.5
1,026,146	-		BBR_RS14490	0.75	-0.4
1,026,155	+		BBR_RS14490	0.76	-1.5
1,026,212	-		BBR_RS14490	0.80	-1.0
1,026,261	-		BBR_RS14490	0.84	-0.6
1,026,265	+		BBR_RS14490	0.84	-0.4
1,026,279	-		BBR_RS14490	0.85	-0.1
1,026,517	+				+2.4
1,026,639	+				+0.4
1,026,760	+		BBR_RS14495	0.17	+0.1
1,027,204	+		BBR_RS14495	0.49	-1.6
1,027,217	+		BBR_RS14495	0.50	-0.1
1,027,257	+		BBR_RS14495	0.53	-0.1
1,027,304	+		BBR_RS14495	0.57	-1.9
1,027,425	+		BBR_RS14495	0.65	+1.7
1,027,461	+		BBR_RS14495	0.68	-0.1
1,027,689	+		BBR_RS14495	0.85	-0.5
1,027,719	+		BBR_RS14495	0.87	-0.5
1,027,855	+				-1.0
1,027,882	+				-0.8
1,028,003	+				+0.6
1,028,003	+				+0.2
1,028,003	+				-0.6
1,028,024	-				+0.3
1,028,041	+				-0.1
1,028,069	+				+0.8
1,028,069	+				-0.1
1,028,085	-				+1.1
1,028,085	-				+1.2
1,028,132	+				+0.2
1,028,146	-				-0.8
1,028,184	+				+0.4
1,028,184	+				+0.1
1,028,192	-				-0.2
1,028,226	-		BBR_RS14500	0.10	+1.3
1,028,243	+		BBR_RS14500	0.11	-1.1
1,028,243	-		BBR_RS14500	0.11	-0.3
1,028,432	-		BBR_RS14500	0.25	+0.1
1,028,464	+		BBR_RS14500	0.27	+0.1
1,028,528	+		BBR_RS14500	0.32	-0.0
1,028,552	-		BBR_RS14500	0.33	+0.8
1,028,642	+		BBR_RS14500	0.40	+0.7
1,028,643	-		BBR_RS14500	0.40	+0.0
1,028,671	-		BBR_RS14500	0.42	-0.1
1,028,711	-		BBR_RS14500	0.45	+0.6
1,028,730	-		BBR_RS14500	0.46	+0.6
1,028,756	+		BBR_RS14500	0.48	+0.5
1,028,756	+		BBR_RS14500	0.48	+0.4
1,028,779	+		BBR_RS14500	0.50	+0.3
1,028,782	-		BBR_RS14500	0.50	-1.1
1,028,784	+		BBR_RS14500	0.50	-2.5
1,028,792	-		BBR_RS14500	0.51	-0.5
1,028,792	-		BBR_RS14500	0.51	+2.4
1,028,792	-		BBR_RS14500	0.51	+1.3
1,028,827	+		BBR_RS14500	0.53	-0.7
1,028,835	-		BBR_RS14500	0.54	+0.8
1,028,839	+		BBR_RS14500	0.54	-0.0
1,028,893	+		BBR_RS14500	0.58	+1.0