Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_87 and Ac3H11_88 are separated by 176 nucleotides Ac3H11_88 and Ac3H11_89 are separated by 35 nucleotides Ac3H11_89 and Ac3H11_90 are separated by 19 nucleotides
Ac3H11_87 - hypothetical protein, at 87,540 to 87,953
_87
Ac3H11_88 - hypothetical protein, at 88,130 to 88,423
_88
Ac3H11_89 - hypothetical protein, at 88,459 to 88,875
_89
Ac3H11_90 - Lignostilbene-alpha,beta-dioxygenase and related enzymes, at 88,895 to 90,412
_90
Position (kb) 88
89 Strain fitness (log2 ratio) -1
0
1 at 87.660 kb on + strand, within Ac3H11_87 at 87.660 kb on + strand, within Ac3H11_87 at 87.661 kb on - strand, within Ac3H11_87 at 88.006 kb on + strand at 88.006 kb on + strand at 88.007 kb on - strand at 88.007 kb on - strand at 88.007 kb on - strand at 88.184 kb on + strand, within Ac3H11_88 at 88.185 kb on - strand, within Ac3H11_88 at 88.185 kb on - strand, within Ac3H11_88 at 88.223 kb on + strand, within Ac3H11_88 at 88.224 kb on - strand, within Ac3H11_88 at 88.300 kb on + strand, within Ac3H11_88 at 88.300 kb on + strand, within Ac3H11_88 at 88.300 kb on + strand, within Ac3H11_88 at 88.693 kb on + strand, within Ac3H11_89 at 88.694 kb on - strand, within Ac3H11_89 at 88.772 kb on - strand, within Ac3H11_89 at 88.874 kb on - strand at 89.132 kb on + strand, within Ac3H11_90 at 89.252 kb on + strand, within Ac3H11_90 at 89.253 kb on - strand, within Ac3H11_90 at 89.585 kb on + strand, within Ac3H11_90 at 89.708 kb on + strand, within Ac3H11_90 at 89.709 kb on - strand, within Ac3H11_90 at 89.709 kb on - strand, within Ac3H11_90
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 87,660 + Ac3H11_87 0.29 +1.1 87,660 + Ac3H11_87 0.29 +0.7 87,661 - Ac3H11_87 0.29 -0.4 88,006 + -1.3 88,006 + +0.5 88,007 - -0.1 88,007 - +0.5 88,007 - -0.5 88,184 + Ac3H11_88 0.18 -0.3 88,185 - Ac3H11_88 0.19 +0.1 88,185 - Ac3H11_88 0.19 +0.4 88,223 + Ac3H11_88 0.32 -0.6 88,224 - Ac3H11_88 0.32 +0.3 88,300 + Ac3H11_88 0.58 +0.3 88,300 + Ac3H11_88 0.58 -1.7 88,300 + Ac3H11_88 0.58 -0.6 88,693 + Ac3H11_89 0.56 +0.2 88,694 - Ac3H11_89 0.56 +1.2 88,772 - Ac3H11_89 0.75 -0.6 88,874 - +0.3 89,132 + Ac3H11_90 0.16 +0.9 89,252 + Ac3H11_90 0.24 -0.0 89,253 - Ac3H11_90 0.24 +0.1 89,585 + Ac3H11_90 0.45 +0.4 89,708 + Ac3H11_90 0.54 -1.2 89,709 - Ac3H11_90 0.54 +0.5 89,709 - Ac3H11_90 0.54 -1.5
Or see this region's nucleotide sequence