Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_72 and Ac3H11_73 are separated by 215 nucleotides Ac3H11_73 and Ac3H11_74 are separated by 27 nucleotides Ac3H11_74 and Ac3H11_75 are separated by 111 nucleotides Ac3H11_75 and Ac3H11_76 are separated by 8 nucleotides
Ac3H11_72 - D-(-)-3-hydroxybutyrate oligomer hydrolase, at 76,316 to 77,191
_72
Ac3H11_73 - Phenylalanyl-tRNA synthetase beta subunit, at 77,407 to 77,874
_73
Ac3H11_74 - hypothetical protein, at 77,902 to 78,144
_74
Ac3H11_75 - Outer membrane lipoprotein blc precursor, at 78,256 to 78,822
_75
Ac3H11_76 - COG3380: Amine oxidase, flavin-containing, at 78,831 to 79,835
_76
Position (kb) 77
78
79 Strain fitness (log2 ratio) -2
-1
0
1 at 76.965 kb on - strand, within Ac3H11_72 at 76.983 kb on - strand, within Ac3H11_72 at 77.241 kb on - strand at 77.241 kb on - strand at 77.241 kb on - strand at 77.241 kb on - strand at 77.267 kb on + strand at 77.268 kb on - strand at 77.367 kb on + strand at 77.473 kb on + strand, within Ac3H11_73 at 77.474 kb on - strand, within Ac3H11_73 at 77.474 kb on - strand, within Ac3H11_73 at 77.474 kb on - strand, within Ac3H11_73 at 77.474 kb on - strand, within Ac3H11_73 at 77.668 kb on + strand, within Ac3H11_73 at 77.668 kb on + strand, within Ac3H11_73 at 77.678 kb on - strand, within Ac3H11_73 at 77.866 kb on + strand at 77.866 kb on + strand at 77.867 kb on - strand at 77.867 kb on - strand at 77.872 kb on + strand at 77.873 kb on - strand at 78.012 kb on - strand, within Ac3H11_74 at 78.012 kb on - strand, within Ac3H11_74 at 78.123 kb on - strand at 78.155 kb on + strand at 78.255 kb on + strand at 78.466 kb on + strand, within Ac3H11_75 at 78.467 kb on - strand, within Ac3H11_75 at 78.467 kb on - strand, within Ac3H11_75 at 78.613 kb on + strand, within Ac3H11_75 at 78.622 kb on + strand, within Ac3H11_75 at 78.649 kb on + strand, within Ac3H11_75 at 78.685 kb on + strand, within Ac3H11_75 at 78.685 kb on + strand, within Ac3H11_75 at 78.685 kb on + strand, within Ac3H11_75 at 78.686 kb on - strand, within Ac3H11_75 at 78.686 kb on - strand, within Ac3H11_75 at 78.830 kb on + strand at 78.830 kb on + strand at 78.830 kb on + strand at 78.831 kb on - strand at 78.831 kb on - strand at 79.014 kb on + strand, within Ac3H11_76
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 76,965 - Ac3H11_72 0.74 -0.5 76,983 - Ac3H11_72 0.76 +0.2 77,241 - -0.2 77,241 - -0.5 77,241 - +0.5 77,241 - -0.4 77,267 + -0.8 77,268 - -0.5 77,367 + -1.9 77,473 + Ac3H11_73 0.14 -0.3 77,474 - Ac3H11_73 0.14 -0.0 77,474 - Ac3H11_73 0.14 -0.5 77,474 - Ac3H11_73 0.14 -0.1 77,474 - Ac3H11_73 0.14 -0.7 77,668 + Ac3H11_73 0.56 +0.7 77,668 + Ac3H11_73 0.56 -2.2 77,678 - Ac3H11_73 0.58 -2.0 77,866 + -0.6 77,866 + +0.2 77,867 - -0.3 77,867 - -0.8 77,872 + +0.1 77,873 - -0.9 78,012 - Ac3H11_74 0.45 -0.5 78,012 - Ac3H11_74 0.45 -0.2 78,123 - -0.1 78,155 + -0.2 78,255 + -0.2 78,466 + Ac3H11_75 0.37 -0.4 78,467 - Ac3H11_75 0.37 +0.7 78,467 - Ac3H11_75 0.37 -0.1 78,613 + Ac3H11_75 0.63 +0.0 78,622 + Ac3H11_75 0.65 +0.5 78,649 + Ac3H11_75 0.69 +0.8 78,685 + Ac3H11_75 0.76 -1.4 78,685 + Ac3H11_75 0.76 +0.1 78,685 + Ac3H11_75 0.76 +0.3 78,686 - Ac3H11_75 0.76 -1.6 78,686 - Ac3H11_75 0.76 +0.4 78,830 + -0.9 78,830 + +0.2 78,830 + -0.1 78,831 - -0.3 78,831 - -0.5 79,014 + Ac3H11_76 0.18 +0.7
Or see this region's nucleotide sequence