Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4747

Experiment: Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4744 and Ac3H11_4745 are separated by 4 nucleotidesAc3H11_4745 and Ac3H11_4746 overlap by 26 nucleotidesAc3H11_4746 and Ac3H11_4747 overlap by 6 nucleotidesAc3H11_4747 and Ac3H11_4748 are separated by 183 nucleotidesAc3H11_4748 and Ac3H11_4749 are separated by 135 nucleotidesAc3H11_4749 and Ac3H11_4750 are separated by 1 nucleotides Ac3H11_4744 - hypothetical protein, at 48,430 to 48,552 _4744 Ac3H11_4745 - FIG137478: Hypothetical protein YbgI, at 48,557 to 49,324 _4745 Ac3H11_4746 - hypothetical protein, at 49,299 to 49,454 _4746 Ac3H11_4747 - 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262), at 49,449 to 50,477 _4747 Ac3H11_4748 - Large-conductance mechanosensitive channel, at 50,661 to 51,092 _4748 Ac3H11_4749 - hypothetical protein, at 51,228 to 51,431 _4749 Ac3H11_4750 - Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2), at 51,433 to 51,843 _4750 Position (kb) 49 50 51Strain fitness (log2 ratio) -2 -1 0 1 2at 48.848 kb on + strand, within Ac3H11_4745at 49.112 kb on + strand, within Ac3H11_4745at 49.113 kb on - strand, within Ac3H11_4745at 49.113 kb on - strand, within Ac3H11_4745at 49.113 kb on - strand, within Ac3H11_4745at 49.343 kb on + strand, within Ac3H11_4746at 49.343 kb on + strand, within Ac3H11_4746at 49.344 kb on - strand, within Ac3H11_4746at 49.344 kb on - strand, within Ac3H11_4746at 49.361 kb on + strand, within Ac3H11_4746at 49.362 kb on - strand, within Ac3H11_4746at 50.476 kb on - strandat 50.507 kb on + strandat 50.507 kb on + strandat 50.507 kb on + strandat 50.507 kb on + strandat 50.508 kb on - strandat 50.508 kb on - strandat 50.508 kb on - strandat 50.508 kb on - strandat 50.508 kb on - strandat 50.508 kb on - strandat 50.528 kb on + strandat 50.528 kb on + strandat 50.528 kb on + strandat 50.528 kb on + strandat 50.528 kb on + strandat 50.528 kb on + strandat 50.528 kb on + strandat 50.528 kb on + strandat 50.528 kb on + strandat 50.528 kb on + strandat 50.528 kb on + strandat 50.529 kb on - strandat 50.529 kb on - strandat 50.529 kb on - strandat 50.529 kb on - strandat 50.529 kb on - strandat 50.529 kb on - strandat 50.529 kb on - strandat 50.529 kb on - strandat 50.529 kb on - strandat 50.529 kb on - strandat 50.529 kb on - strandat 50.529 kb on - strandat 50.529 kb on - strandat 50.529 kb on - strandat 50.529 kb on - strandat 50.658 kb on + strandat 50.659 kb on - strandat 50.659 kb on - strandat 50.662 kb on + strandat 50.662 kb on + strandat 50.662 kb on + strandat 50.662 kb on + strandat 50.662 kb on + strandat 50.662 kb on + strandat 50.662 kb on + strandat 50.662 kb on + strandat 50.662 kb on + strandat 50.662 kb on + strandat 50.662 kb on + strandat 50.662 kb on + strandat 50.662 kb on + strandat 50.662 kb on + strandat 50.663 kb on - strandat 50.663 kb on - strandat 50.663 kb on - strandat 50.663 kb on - strandat 50.663 kb on - strandat 50.663 kb on - strandat 50.663 kb on - strandat 50.663 kb on - strandat 50.663 kb on - strandat 50.663 kb on - strandat 50.663 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml
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48,848 + Ac3H11_4745 0.38 +0.1
49,112 + Ac3H11_4745 0.72 -1.0
49,113 - Ac3H11_4745 0.72 -0.6
49,113 - Ac3H11_4745 0.72 -0.9
49,113 - Ac3H11_4745 0.72 -1.4
49,343 + Ac3H11_4746 0.28 -0.9
49,343 + Ac3H11_4746 0.28 +0.6
49,344 - Ac3H11_4746 0.29 -0.2
49,344 - Ac3H11_4746 0.29 -0.1
49,361 + Ac3H11_4746 0.40 -0.3
49,362 - Ac3H11_4746 0.40 +0.3
50,476 - +0.3
50,507 + -0.8
50,507 + +0.1
50,507 + +0.7
50,507 + -0.9
50,508 - +0.0
50,508 - -0.2
50,508 - -1.0
50,508 - +0.6
50,508 - -1.3
50,508 - +0.5
50,528 + +0.6
50,528 + -1.8
50,528 + -0.2
50,528 + +1.6
50,528 + +0.3
50,528 + +0.3
50,528 + +1.2
50,528 + +1.2
50,528 + -0.2
50,528 + +0.4
50,528 + -0.7
50,529 - +0.3
50,529 - +0.5
50,529 - +0.2
50,529 - +0.7
50,529 - +0.5
50,529 - -0.7
50,529 - +0.6
50,529 - +1.2
50,529 - -0.3
50,529 - +0.4
50,529 - -0.5
50,529 - -0.2
50,529 - +1.7
50,529 - +0.8
50,529 - +0.6
50,658 + -1.3
50,659 - -1.0
50,659 - +0.3
50,662 + +0.7
50,662 + -0.3
50,662 + +0.4
50,662 + -1.1
50,662 + -0.6
50,662 + +1.0
50,662 + +1.5
50,662 + -0.1
50,662 + +1.4
50,662 + +1.1
50,662 + -0.2
50,662 + +0.6
50,662 + +0.1
50,662 + +0.8
50,663 - +0.1
50,663 - -0.4
50,663 - +0.5
50,663 - +0.1
50,663 - +0.0
50,663 - +0.4
50,663 - -0.4
50,663 - +1.8
50,663 - +0.6
50,663 - -0.2
50,663 - +0.8

Or see this region's nucleotide sequence