Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_311 and Ac3H11_312 are separated by 93 nucleotides Ac3H11_312 and Ac3H11_313 are separated by 35 nucleotides Ac3H11_313 and Ac3H11_314 are separated by 849 nucleotides
Ac3H11_311 - hypothetical protein, at 133,038 to 133,157
_311
Ac3H11_312 - DedA protein, at 133,251 to 133,964
_312
Ac3H11_313 - DNA mismatch repair protein MutL, at 134,000 to 136,054
_313
Ac3H11_314 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46), at 136,904 to 138,067
_314
Position (kb) 133
134
135
136
137 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 133.926 kb on - strand at 133.996 kb on + strand at 133.997 kb on - strand at 134.488 kb on - strand, within Ac3H11_313 at 134.488 kb on - strand, within Ac3H11_313 at 134.840 kb on + strand, within Ac3H11_313 at 134.840 kb on + strand, within Ac3H11_313 at 134.840 kb on + strand, within Ac3H11_313 at 134.840 kb on + strand, within Ac3H11_313 at 134.840 kb on + strand, within Ac3H11_313 at 134.840 kb on + strand, within Ac3H11_313 at 134.840 kb on + strand, within Ac3H11_313 at 134.841 kb on - strand, within Ac3H11_313 at 134.841 kb on - strand, within Ac3H11_313 at 134.841 kb on - strand, within Ac3H11_313 at 134.841 kb on - strand, within Ac3H11_313 at 134.841 kb on - strand, within Ac3H11_313 at 134.846 kb on + strand, within Ac3H11_313 at 134.846 kb on + strand, within Ac3H11_313 at 134.846 kb on + strand, within Ac3H11_313 at 134.847 kb on - strand, within Ac3H11_313 at 134.847 kb on - strand, within Ac3H11_313 at 134.847 kb on - strand, within Ac3H11_313 at 134.847 kb on - strand, within Ac3H11_313 at 134.903 kb on + strand, within Ac3H11_313 at 134.904 kb on - strand, within Ac3H11_313 at 134.904 kb on - strand, within Ac3H11_313 at 134.939 kb on + strand, within Ac3H11_313 at 134.939 kb on + strand, within Ac3H11_313 at 134.939 kb on + strand, within Ac3H11_313 at 134.939 kb on + strand, within Ac3H11_313 at 134.939 kb on + strand, within Ac3H11_313 at 134.939 kb on + strand, within Ac3H11_313 at 134.939 kb on + strand, within Ac3H11_313 at 134.939 kb on + strand, within Ac3H11_313 at 134.939 kb on + strand, within Ac3H11_313 at 134.939 kb on + strand, within Ac3H11_313 at 134.939 kb on + strand, within Ac3H11_313 at 134.940 kb on - strand, within Ac3H11_313 at 134.940 kb on - strand, within Ac3H11_313 at 134.940 kb on - strand, within Ac3H11_313 at 134.940 kb on - strand, within Ac3H11_313 at 134.940 kb on - strand, within Ac3H11_313 at 134.940 kb on - strand, within Ac3H11_313 at 134.940 kb on - strand, within Ac3H11_313 at 134.940 kb on - strand, within Ac3H11_313 at 134.940 kb on - strand, within Ac3H11_313 at 134.940 kb on - strand, within Ac3H11_313 at 134.940 kb on - strand, within Ac3H11_313 at 134.948 kb on + strand, within Ac3H11_313 at 134.948 kb on + strand, within Ac3H11_313 at 134.948 kb on + strand, within Ac3H11_313 at 134.948 kb on + strand, within Ac3H11_313 at 134.948 kb on + strand, within Ac3H11_313 at 134.948 kb on + strand, within Ac3H11_313 at 134.948 kb on + strand, within Ac3H11_313 at 134.948 kb on + strand, within Ac3H11_313 at 134.948 kb on + strand, within Ac3H11_313 at 134.949 kb on - strand, within Ac3H11_313 at 134.949 kb on - strand, within Ac3H11_313 at 134.949 kb on - strand, within Ac3H11_313 at 134.949 kb on - strand, within Ac3H11_313 at 134.949 kb on - strand, within Ac3H11_313 at 134.949 kb on - strand, within Ac3H11_313 at 134.949 kb on - strand, within Ac3H11_313 at 134.949 kb on - strand, within Ac3H11_313 at 134.949 kb on - strand, within Ac3H11_313 at 134.949 kb on - strand, within Ac3H11_313 at 135.181 kb on + strand, within Ac3H11_313 at 135.181 kb on + strand, within Ac3H11_313 at 135.182 kb on - strand, within Ac3H11_313 at 135.241 kb on + strand, within Ac3H11_313 at 135.241 kb on + strand, within Ac3H11_313 at 135.241 kb on + strand, within Ac3H11_313 at 135.242 kb on - strand, within Ac3H11_313 at 135.242 kb on - strand, within Ac3H11_313 at 135.242 kb on - strand, within Ac3H11_313 at 135.242 kb on - strand, within Ac3H11_313 at 135.242 kb on - strand, within Ac3H11_313 at 135.242 kb on - strand, within Ac3H11_313 at 135.242 kb on - strand, within Ac3H11_313 at 135.242 kb on - strand, within Ac3H11_313 at 135.242 kb on - strand, within Ac3H11_313 at 135.244 kb on + strand, within Ac3H11_313 at 135.244 kb on + strand, within Ac3H11_313 at 135.244 kb on + strand, within Ac3H11_313 at 135.244 kb on + strand, within Ac3H11_313 at 135.244 kb on + strand, within Ac3H11_313 at 135.244 kb on + strand, within Ac3H11_313 at 135.244 kb on + strand, within Ac3H11_313 at 135.244 kb on + strand, within Ac3H11_313 at 135.244 kb on + strand, within Ac3H11_313 at 135.244 kb on + strand, within Ac3H11_313 at 135.244 kb on + strand, within Ac3H11_313 at 135.244 kb on + strand, within Ac3H11_313 at 135.244 kb on + strand, within Ac3H11_313 at 135.245 kb on - strand, within Ac3H11_313 at 135.245 kb on - strand, within Ac3H11_313 at 135.245 kb on - strand, within Ac3H11_313 at 135.245 kb on - strand, within Ac3H11_313 at 135.245 kb on - strand, within Ac3H11_313 at 135.245 kb on - strand, within Ac3H11_313 at 135.245 kb on - strand, within Ac3H11_313 at 135.245 kb on - strand, within Ac3H11_313 at 135.245 kb on - strand, within Ac3H11_313 at 135.245 kb on - strand, within Ac3H11_313 at 135.245 kb on - strand, within Ac3H11_313 at 135.245 kb on - strand, within Ac3H11_313 at 135.245 kb on - strand, within Ac3H11_313 at 135.245 kb on - strand, within Ac3H11_313 at 135.247 kb on + strand, within Ac3H11_313 at 135.247 kb on + strand, within Ac3H11_313 at 135.247 kb on + strand, within Ac3H11_313 at 135.247 kb on + strand, within Ac3H11_313 at 135.247 kb on + strand, within Ac3H11_313 at 135.248 kb on - strand, within Ac3H11_313 at 135.248 kb on - strand, within Ac3H11_313 at 135.248 kb on - strand, within Ac3H11_313 at 135.248 kb on - strand, within Ac3H11_313 at 135.248 kb on - strand, within Ac3H11_313 at 135.248 kb on - strand, within Ac3H11_313 at 135.259 kb on + strand, within Ac3H11_313 at 135.259 kb on + strand, within Ac3H11_313 at 135.260 kb on - strand, within Ac3H11_313 at 135.260 kb on - strand, within Ac3H11_313 at 135.509 kb on + strand, within Ac3H11_313 at 135.509 kb on + strand, within Ac3H11_313 at 135.509 kb on + strand, within Ac3H11_313 at 135.509 kb on + strand, within Ac3H11_313 at 135.510 kb on - strand, within Ac3H11_313 at 135.510 kb on - strand, within Ac3H11_313 at 135.510 kb on - strand, within Ac3H11_313 at 135.510 kb on - strand, within Ac3H11_313 at 135.510 kb on - strand, within Ac3H11_313 at 135.510 kb on - strand, within Ac3H11_313 at 135.578 kb on + strand, within Ac3H11_313 at 135.578 kb on + strand, within Ac3H11_313 at 135.579 kb on - strand, within Ac3H11_313 at 135.579 kb on - strand, within Ac3H11_313 at 135.579 kb on - strand, within Ac3H11_313 at 135.579 kb on - strand, within Ac3H11_313 at 136.053 kb on - strand at 136.136 kb on + strand at 136.136 kb on + strand at 136.136 kb on + strand at 136.136 kb on + strand at 136.137 kb on - strand at 136.137 kb on - strand at 136.137 kb on - strand at 136.137 kb on - strand at 136.137 kb on - strand at 136.137 kb on - strand at 136.183 kb on + strand at 136.183 kb on + strand at 136.184 kb on - strand at 136.204 kb on + strand at 136.250 kb on - strand at 136.399 kb on + strand at 136.458 kb on + strand at 136.475 kb on + strand at 136.475 kb on + strand at 136.475 kb on + strand at 136.476 kb on - strand at 136.476 kb on - strand at 136.476 kb on - strand at 136.476 kb on - strand at 136.476 kb on - strand at 136.476 kb on - strand at 136.476 kb on - strand at 136.476 kb on - strand at 136.534 kb on + strand at 136.534 kb on + strand at 136.534 kb on + strand at 136.535 kb on - strand at 136.535 kb on - strand at 136.576 kb on - strand at 136.576 kb on - strand at 136.595 kb on + strand at 136.596 kb on - strand at 136.596 kb on - strand at 136.596 kb on - strand at 136.622 kb on - strand at 136.626 kb on + strand at 136.626 kb on + strand at 136.626 kb on + strand at 136.627 kb on - strand at 136.627 kb on - strand at 136.627 kb on - strand at 136.627 kb on - strand at 136.627 kb on - strand at 136.669 kb on - strand at 136.678 kb on + strand at 136.683 kb on + strand at 136.684 kb on - strand at 136.732 kb on + strand at 136.776 kb on + strand at 136.777 kb on - strand at 136.777 kb on - strand at 136.778 kb on + strand at 136.803 kb on + strand at 136.804 kb on - strand at 136.826 kb on + strand at 136.826 kb on + strand at 136.827 kb on - strand at 136.827 kb on - strand at 136.830 kb on + strand at 136.830 kb on + strand at 136.831 kb on - strand at 136.831 kb on - strand at 136.834 kb on + strand at 136.835 kb on - strand at 136.886 kb on + strand at 136.886 kb on + strand at 136.886 kb on + strand at 136.886 kb on + strand at 136.886 kb on + strand at 136.887 kb on - strand at 136.887 kb on - strand at 136.887 kb on - strand at 136.894 kb on + strand at 136.894 kb on + strand at 136.894 kb on + strand at 136.894 kb on + strand at 136.894 kb on + strand at 136.894 kb on + strand at 136.894 kb on + strand at 136.894 kb on + strand at 136.895 kb on - strand at 136.895 kb on - strand at 136.895 kb on - strand at 136.910 kb on - strand at 136.910 kb on - strand at 136.971 kb on + strand at 136.971 kb on + strand at 136.971 kb on + strand at 136.971 kb on + strand at 136.971 kb on + strand at 136.971 kb on + strand at 136.971 kb on + strand at 136.972 kb on - strand at 136.972 kb on - strand at 136.972 kb on - strand at 136.972 kb on - strand at 136.972 kb on - strand at 136.972 kb on - strand at 136.983 kb on + strand at 136.983 kb on + strand at 136.983 kb on + strand at 136.983 kb on + strand at 136.983 kb on + strand at 136.984 kb on - strand at 136.984 kb on - strand at 137.046 kb on + strand, within Ac3H11_314 at 137.046 kb on + strand, within Ac3H11_314 at 137.046 kb on + strand, within Ac3H11_314 at 137.046 kb on + strand, within Ac3H11_314 at 137.046 kb on + strand, within Ac3H11_314 at 137.046 kb on + strand, within Ac3H11_314 at 137.046 kb on + strand, within Ac3H11_314 at 137.046 kb on + strand, within Ac3H11_314 at 137.046 kb on + strand, within Ac3H11_314 at 137.046 kb on + strand, within Ac3H11_314 at 137.046 kb on + strand, within Ac3H11_314 at 137.047 kb on - strand, within Ac3H11_314 at 137.047 kb on - strand, within Ac3H11_314 at 137.047 kb on - strand, within Ac3H11_314 at 137.047 kb on - strand, within Ac3H11_314 at 137.047 kb on - strand, within Ac3H11_314 at 137.047 kb on - strand, within Ac3H11_314 at 137.047 kb on - strand, within Ac3H11_314
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 133,926 - -0.0 133,996 + -0.7 133,997 - +0.2 134,488 - Ac3H11_313 0.24 -0.1 134,488 - Ac3H11_313 0.24 +0.6 134,840 + Ac3H11_313 0.41 +0.4 134,840 + Ac3H11_313 0.41 -0.2 134,840 + Ac3H11_313 0.41 +1.3 134,840 + Ac3H11_313 0.41 +0.8 134,840 + Ac3H11_313 0.41 -0.5 134,840 + Ac3H11_313 0.41 -0.5 134,840 + Ac3H11_313 0.41 -1.0 134,841 - Ac3H11_313 0.41 +0.8 134,841 - Ac3H11_313 0.41 +0.2 134,841 - Ac3H11_313 0.41 -0.6 134,841 - Ac3H11_313 0.41 -1.2 134,841 - Ac3H11_313 0.41 +0.9 134,846 + Ac3H11_313 0.41 -0.8 134,846 + Ac3H11_313 0.41 -0.6 134,846 + Ac3H11_313 0.41 +0.0 134,847 - Ac3H11_313 0.41 -0.2 134,847 - Ac3H11_313 0.41 -1.4 134,847 - Ac3H11_313 0.41 -0.1 134,847 - Ac3H11_313 0.41 -0.8 134,903 + Ac3H11_313 0.44 -0.0 134,904 - Ac3H11_313 0.44 +0.4 134,904 - Ac3H11_313 0.44 -0.7 134,939 + Ac3H11_313 0.46 -0.3 134,939 + Ac3H11_313 0.46 +0.2 134,939 + Ac3H11_313 0.46 -0.8 134,939 + Ac3H11_313 0.46 -0.2 134,939 + Ac3H11_313 0.46 -0.0 134,939 + Ac3H11_313 0.46 +0.6 134,939 + Ac3H11_313 0.46 -0.7 134,939 + Ac3H11_313 0.46 -0.2 134,939 + Ac3H11_313 0.46 -1.1 134,939 + Ac3H11_313 0.46 -1.3 134,939 + Ac3H11_313 0.46 -0.4 134,940 - Ac3H11_313 0.46 +0.2 134,940 - Ac3H11_313 0.46 -0.5 134,940 - Ac3H11_313 0.46 -1.0 134,940 - Ac3H11_313 0.46 -0.7 134,940 - Ac3H11_313 0.46 +1.4 134,940 - Ac3H11_313 0.46 +0.5 134,940 - Ac3H11_313 0.46 -0.5 134,940 - Ac3H11_313 0.46 -0.3 134,940 - Ac3H11_313 0.46 +0.1 134,940 - Ac3H11_313 0.46 +0.4 134,940 - Ac3H11_313 0.46 -0.0 134,948 + Ac3H11_313 0.46 +0.2 134,948 + Ac3H11_313 0.46 -1.0 134,948 + Ac3H11_313 0.46 -0.5 134,948 + Ac3H11_313 0.46 +2.2 134,948 + Ac3H11_313 0.46 +0.6 134,948 + Ac3H11_313 0.46 +0.4 134,948 + Ac3H11_313 0.46 -0.6 134,948 + Ac3H11_313 0.46 -0.1 134,948 + Ac3H11_313 0.46 -1.1 134,949 - Ac3H11_313 0.46 +0.1 134,949 - Ac3H11_313 0.46 +0.3 134,949 - Ac3H11_313 0.46 -0.1 134,949 - Ac3H11_313 0.46 -2.2 134,949 - Ac3H11_313 0.46 -0.6 134,949 - Ac3H11_313 0.46 +0.3 134,949 - Ac3H11_313 0.46 -0.1 134,949 - Ac3H11_313 0.46 -0.5 134,949 - Ac3H11_313 0.46 -1.1 134,949 - Ac3H11_313 0.46 +0.0 135,181 + Ac3H11_313 0.57 -0.4 135,181 + Ac3H11_313 0.57 +0.2 135,182 - Ac3H11_313 0.58 -0.1 135,241 + Ac3H11_313 0.60 -0.1 135,241 + Ac3H11_313 0.60 -1.6 135,241 + Ac3H11_313 0.60 -0.0 135,242 - Ac3H11_313 0.60 +0.9 135,242 - Ac3H11_313 0.60 -2.0 135,242 - Ac3H11_313 0.60 +0.3 135,242 - Ac3H11_313 0.60 -0.2 135,242 - Ac3H11_313 0.60 +0.3 135,242 - Ac3H11_313 0.60 +0.1 135,242 - Ac3H11_313 0.60 +0.5 135,242 - Ac3H11_313 0.60 -0.4 135,242 - Ac3H11_313 0.60 -1.3 135,244 + Ac3H11_313 0.61 +0.6 135,244 + Ac3H11_313 0.61 -1.0 135,244 + Ac3H11_313 0.61 +0.3 135,244 + Ac3H11_313 0.61 +0.8 135,244 + Ac3H11_313 0.61 +0.4 135,244 + Ac3H11_313 0.61 -0.3 135,244 + Ac3H11_313 0.61 -0.7 135,244 + Ac3H11_313 0.61 -0.9 135,244 + Ac3H11_313 0.61 -0.3 135,244 + Ac3H11_313 0.61 +0.0 135,244 + Ac3H11_313 0.61 +0.2 135,244 + Ac3H11_313 0.61 +0.1 135,244 + Ac3H11_313 0.61 +1.1 135,245 - Ac3H11_313 0.61 +0.2 135,245 - Ac3H11_313 0.61 -1.6 135,245 - Ac3H11_313 0.61 +0.1 135,245 - Ac3H11_313 0.61 -0.1 135,245 - Ac3H11_313 0.61 -0.0 135,245 - Ac3H11_313 0.61 +0.0 135,245 - Ac3H11_313 0.61 +1.8 135,245 - Ac3H11_313 0.61 -0.5 135,245 - Ac3H11_313 0.61 -0.4 135,245 - Ac3H11_313 0.61 +0.3 135,245 - Ac3H11_313 0.61 -0.6 135,245 - Ac3H11_313 0.61 +0.4 135,245 - Ac3H11_313 0.61 +0.0 135,245 - Ac3H11_313 0.61 -0.0 135,247 + Ac3H11_313 0.61 -0.2 135,247 + Ac3H11_313 0.61 +0.2 135,247 + Ac3H11_313 0.61 -0.9 135,247 + Ac3H11_313 0.61 -0.6 135,247 + Ac3H11_313 0.61 +0.2 135,248 - Ac3H11_313 0.61 -1.9 135,248 - Ac3H11_313 0.61 +0.1 135,248 - Ac3H11_313 0.61 -0.1 135,248 - Ac3H11_313 0.61 +1.3 135,248 - Ac3H11_313 0.61 +0.6 135,248 - Ac3H11_313 0.61 -0.3 135,259 + Ac3H11_313 0.61 -0.1 135,259 + Ac3H11_313 0.61 -2.0 135,260 - Ac3H11_313 0.61 +0.1 135,260 - Ac3H11_313 0.61 -0.0 135,509 + Ac3H11_313 0.73 -1.4 135,509 + Ac3H11_313 0.73 +0.2 135,509 + Ac3H11_313 0.73 +0.6 135,509 + Ac3H11_313 0.73 -0.4 135,510 - Ac3H11_313 0.73 +0.3 135,510 - Ac3H11_313 0.73 -0.3 135,510 - Ac3H11_313 0.73 +0.5 135,510 - Ac3H11_313 0.73 +0.4 135,510 - Ac3H11_313 0.73 -1.6 135,510 - Ac3H11_313 0.73 +0.1 135,578 + Ac3H11_313 0.77 -0.5 135,578 + Ac3H11_313 0.77 +1.0 135,579 - Ac3H11_313 0.77 -1.2 135,579 - Ac3H11_313 0.77 -0.3 135,579 - Ac3H11_313 0.77 -0.2 135,579 - Ac3H11_313 0.77 +0.3 136,053 - -0.2 136,136 + +1.0 136,136 + +0.2 136,136 + +0.9 136,136 + -0.2 136,137 - -1.2 136,137 - -0.9 136,137 - -0.8 136,137 - -0.1 136,137 - -0.9 136,137 - -0.1 136,183 + +0.7 136,183 + +0.4 136,184 - +0.8 136,204 + -0.5 136,250 - -2.0 136,399 + +0.1 136,458 + -1.9 136,475 + -0.0 136,475 + +0.2 136,475 + +0.3 136,476 - +1.3 136,476 - +0.5 136,476 - -0.1 136,476 - +0.7 136,476 - +0.8 136,476 - -0.2 136,476 - +0.2 136,476 - +0.3 136,534 + -0.6 136,534 + +0.2 136,534 + +0.1 136,535 - -0.1 136,535 - +0.1 136,576 - +1.0 136,576 - +0.4 136,595 + -0.3 136,596 - -0.0 136,596 - -0.1 136,596 - -0.4 136,622 - +2.0 136,626 + +0.4 136,626 + +0.3 136,626 + +0.1 136,627 - +0.1 136,627 - +0.6 136,627 - -1.1 136,627 - -0.3 136,627 - +0.6 136,669 - -0.9 136,678 + +0.6 136,683 + -1.3 136,684 - +0.5 136,732 + +0.8 136,776 + +0.8 136,777 - -0.7 136,777 - +0.5 136,778 + -0.3 136,803 + -2.9 136,804 - -1.1 136,826 + +0.5 136,826 + -0.3 136,827 - -0.2 136,827 - -0.6 136,830 + +0.4 136,830 + -0.0 136,831 - +0.2 136,831 - -0.1 136,834 + +0.1 136,835 - -0.8 136,886 + -0.1 136,886 + +0.0 136,886 + -0.1 136,886 + -0.6 136,886 + +0.8 136,887 - +0.8 136,887 - -0.4 136,887 - -1.0 136,894 + -0.4 136,894 + -0.1 136,894 + -0.7 136,894 + -0.2 136,894 + -0.3 136,894 + +2.1 136,894 + -2.9 136,894 + -0.8 136,895 - +0.1 136,895 - -0.2 136,895 - +0.1 136,910 - -0.4 136,910 - -0.8 136,971 + -0.5 136,971 + +0.8 136,971 + +0.3 136,971 + -0.6 136,971 + +0.4 136,971 + +0.2 136,971 + -0.3 136,972 - -0.1 136,972 - +0.1 136,972 - +0.5 136,972 - +0.8 136,972 - -1.0 136,972 - +1.0 136,983 + +1.0 136,983 + +0.4 136,983 + +0.1 136,983 + -1.0 136,983 + +0.6 136,984 - -0.4 136,984 - -0.4 137,046 + Ac3H11_314 0.12 -0.1 137,046 + Ac3H11_314 0.12 -0.8 137,046 + Ac3H11_314 0.12 +0.2 137,046 + Ac3H11_314 0.12 +1.0 137,046 + Ac3H11_314 0.12 +0.2 137,046 + Ac3H11_314 0.12 +1.1 137,046 + Ac3H11_314 0.12 +0.2 137,046 + Ac3H11_314 0.12 -1.0 137,046 + Ac3H11_314 0.12 +0.7 137,046 + Ac3H11_314 0.12 +0.0 137,046 + Ac3H11_314 0.12 -0.5 137,047 - Ac3H11_314 0.12 +0.8 137,047 - Ac3H11_314 0.12 +0.9 137,047 - Ac3H11_314 0.12 +1.5 137,047 - Ac3H11_314 0.12 -1.6 137,047 - Ac3H11_314 0.12 +0.3 137,047 - Ac3H11_314 0.12 +1.1 137,047 - Ac3H11_314 0.12 +0.2
Or see this region's nucleotide sequence