Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2027 and Ac3H11_2028 are separated by 193 nucleotides Ac3H11_2028 and Ac3H11_2029 are separated by 107 nucleotides
Ac3H11_2027 - Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17), at 245,719 to 247,635
_2027
Ac3H11_2028 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 247,829 to 249,481
_2028
Ac3H11_2029 - General secretion pathway protein E / Type II secretion cytoplasmic ATP binding protein (PulE, ATPase), at 249,589 to 250,977
_2029
Position (kb) 247
248
249
250 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 246.838 kb on + strand, within Ac3H11_2027 at 246.838 kb on + strand, within Ac3H11_2027 at 246.839 kb on - strand, within Ac3H11_2027 at 246.839 kb on - strand, within Ac3H11_2027 at 246.877 kb on + strand, within Ac3H11_2027 at 246.877 kb on + strand, within Ac3H11_2027 at 246.878 kb on - strand, within Ac3H11_2027 at 247.099 kb on + strand, within Ac3H11_2027 at 247.099 kb on + strand, within Ac3H11_2027 at 247.100 kb on - strand, within Ac3H11_2027 at 247.138 kb on + strand, within Ac3H11_2027 at 247.138 kb on + strand, within Ac3H11_2027 at 247.138 kb on + strand, within Ac3H11_2027 at 247.138 kb on + strand, within Ac3H11_2027 at 247.139 kb on - strand, within Ac3H11_2027 at 247.139 kb on - strand, within Ac3H11_2027 at 247.204 kb on + strand, within Ac3H11_2027 at 247.204 kb on + strand, within Ac3H11_2027 at 247.204 kb on + strand, within Ac3H11_2027 at 247.204 kb on + strand, within Ac3H11_2027 at 247.205 kb on - strand, within Ac3H11_2027 at 247.205 kb on - strand, within Ac3H11_2027 at 247.205 kb on - strand, within Ac3H11_2027 at 247.205 kb on - strand, within Ac3H11_2027 at 247.205 kb on - strand, within Ac3H11_2027 at 247.205 kb on - strand, within Ac3H11_2027 at 247.270 kb on + strand, within Ac3H11_2027 at 247.270 kb on + strand, within Ac3H11_2027 at 247.270 kb on + strand, within Ac3H11_2027 at 247.271 kb on - strand, within Ac3H11_2027 at 247.271 kb on - strand, within Ac3H11_2027 at 247.271 kb on - strand, within Ac3H11_2027 at 247.414 kb on + strand, within Ac3H11_2027 at 247.414 kb on + strand, within Ac3H11_2027 at 247.415 kb on - strand, within Ac3H11_2027 at 247.415 kb on - strand, within Ac3H11_2027 at 247.612 kb on + strand at 247.612 kb on + strand at 247.612 kb on + strand at 247.612 kb on + strand at 247.612 kb on + strand at 247.612 kb on + strand at 247.612 kb on + strand at 247.612 kb on + strand at 247.612 kb on + strand at 247.612 kb on + strand at 247.612 kb on + strand at 247.612 kb on + strand at 247.613 kb on - strand at 247.613 kb on - strand at 247.613 kb on - strand at 247.613 kb on - strand at 247.613 kb on - strand at 247.613 kb on - strand at 247.613 kb on - strand at 247.613 kb on - strand at 247.613 kb on - strand at 247.613 kb on - strand at 247.613 kb on - strand at 247.613 kb on - strand at 247.613 kb on - strand at 247.613 kb on - strand at 247.613 kb on - strand at 247.613 kb on - strand at 247.613 kb on - strand at 247.613 kb on - strand at 247.613 kb on - strand at 247.675 kb on + strand at 247.700 kb on + strand at 247.700 kb on + strand at 247.700 kb on + strand at 247.700 kb on + strand at 247.701 kb on - strand at 247.701 kb on - strand at 247.701 kb on - strand at 247.701 kb on - strand at 247.701 kb on - strand at 247.701 kb on - strand at 247.731 kb on + strand at 247.731 kb on + strand at 247.731 kb on + strand at 247.731 kb on + strand at 247.731 kb on + strand at 247.731 kb on + strand at 247.731 kb on + strand at 247.731 kb on + strand at 247.731 kb on + strand at 247.731 kb on + strand at 247.732 kb on - strand at 247.732 kb on - strand at 247.732 kb on - strand at 247.732 kb on - strand at 247.732 kb on - strand at 247.732 kb on - strand at 247.732 kb on - strand at 247.732 kb on - strand at 247.733 kb on + strand at 247.733 kb on + strand at 247.733 kb on + strand at 247.733 kb on + strand at 247.733 kb on + strand at 247.733 kb on + strand at 247.733 kb on + strand at 247.733 kb on + strand at 247.733 kb on + strand at 247.733 kb on + strand at 247.733 kb on + strand at 247.733 kb on + strand at 247.734 kb on - strand at 247.734 kb on - strand at 247.734 kb on - strand at 247.734 kb on - strand at 247.734 kb on - strand at 247.734 kb on - strand at 247.734 kb on - strand at 247.734 kb on - strand at 247.734 kb on - strand at 247.734 kb on - strand at 247.734 kb on - strand at 247.734 kb on - strand at 247.734 kb on - strand at 247.734 kb on - strand at 247.792 kb on - strand at 247.792 kb on - strand at 247.868 kb on + strand at 247.868 kb on + strand at 247.868 kb on + strand at 247.868 kb on + strand at 247.869 kb on - strand at 247.869 kb on - strand at 247.869 kb on - strand at 247.869 kb on - strand at 247.869 kb on - strand at 247.869 kb on - strand at 247.922 kb on + strand at 247.922 kb on + strand at 247.922 kb on + strand at 247.922 kb on + strand at 247.922 kb on + strand at 247.922 kb on + strand at 247.922 kb on + strand at 247.922 kb on + strand at 247.922 kb on + strand at 247.923 kb on - strand at 247.923 kb on - strand at 247.923 kb on - strand at 247.923 kb on - strand at 247.923 kb on - strand at 247.977 kb on + strand at 248.211 kb on - strand, within Ac3H11_2028 at 248.282 kb on + strand, within Ac3H11_2028 at 248.282 kb on + strand, within Ac3H11_2028 at 248.282 kb on + strand, within Ac3H11_2028 at 248.282 kb on + strand, within Ac3H11_2028 at 249.310 kb on + strand, within Ac3H11_2028 at 249.311 kb on - strand, within Ac3H11_2028 at 249.401 kb on + strand at 249.401 kb on + strand at 249.401 kb on + strand at 249.401 kb on + strand at 249.401 kb on + strand at 249.502 kb on + strand at 249.503 kb on - strand at 249.524 kb on + strand at 249.524 kb on + strand at 249.525 kb on - strand at 249.630 kb on + strand at 249.630 kb on + strand at 249.839 kb on + strand, within Ac3H11_2029 at 249.840 kb on - strand, within Ac3H11_2029 at 249.840 kb on - strand, within Ac3H11_2029 at 250.137 kb on - strand, within Ac3H11_2029 at 250.202 kb on + strand, within Ac3H11_2029 at 250.202 kb on + strand, within Ac3H11_2029 at 250.202 kb on + strand, within Ac3H11_2029 at 250.202 kb on + strand, within Ac3H11_2029 at 250.203 kb on - strand, within Ac3H11_2029 at 250.203 kb on - strand, within Ac3H11_2029
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 246,838 + Ac3H11_2027 0.58 +0.9 246,838 + Ac3H11_2027 0.58 +0.6 246,839 - Ac3H11_2027 0.58 +0.6 246,839 - Ac3H11_2027 0.58 +0.4 246,877 + Ac3H11_2027 0.60 +0.5 246,877 + Ac3H11_2027 0.60 +0.8 246,878 - Ac3H11_2027 0.60 -0.4 247,099 + Ac3H11_2027 0.72 +0.0 247,099 + Ac3H11_2027 0.72 +0.5 247,100 - Ac3H11_2027 0.72 +0.0 247,138 + Ac3H11_2027 0.74 -0.4 247,138 + Ac3H11_2027 0.74 +0.4 247,138 + Ac3H11_2027 0.74 -0.0 247,138 + Ac3H11_2027 0.74 +0.2 247,139 - Ac3H11_2027 0.74 +0.0 247,139 - Ac3H11_2027 0.74 +0.4 247,204 + Ac3H11_2027 0.77 -0.3 247,204 + Ac3H11_2027 0.77 +0.2 247,204 + Ac3H11_2027 0.77 -0.1 247,204 + Ac3H11_2027 0.77 -0.4 247,205 - Ac3H11_2027 0.78 -0.7 247,205 - Ac3H11_2027 0.78 -0.4 247,205 - Ac3H11_2027 0.78 -0.0 247,205 - Ac3H11_2027 0.78 +0.8 247,205 - Ac3H11_2027 0.78 +0.0 247,205 - Ac3H11_2027 0.78 -0.7 247,270 + Ac3H11_2027 0.81 -0.1 247,270 + Ac3H11_2027 0.81 +0.3 247,270 + Ac3H11_2027 0.81 -0.3 247,271 - Ac3H11_2027 0.81 +1.2 247,271 - Ac3H11_2027 0.81 +0.8 247,271 - Ac3H11_2027 0.81 -0.9 247,414 + Ac3H11_2027 0.88 -0.1 247,414 + Ac3H11_2027 0.88 +0.3 247,415 - Ac3H11_2027 0.88 +0.7 247,415 - Ac3H11_2027 0.88 +0.7 247,612 + -0.2 247,612 + +0.4 247,612 + +0.9 247,612 + -0.0 247,612 + +0.2 247,612 + +0.6 247,612 + +0.4 247,612 + +0.9 247,612 + -0.5 247,612 + +0.1 247,612 + -0.0 247,612 + +0.2 247,613 - +0.2 247,613 - +0.1 247,613 - +0.6 247,613 - -0.8 247,613 - +0.6 247,613 - +0.2 247,613 - +0.4 247,613 - +0.7 247,613 - -2.8 247,613 - -0.9 247,613 - -0.4 247,613 - -0.9 247,613 - +0.1 247,613 - -0.9 247,613 - -0.7 247,613 - +0.2 247,613 - -0.5 247,613 - +0.0 247,613 - +0.1 247,675 + +0.3 247,700 + -0.5 247,700 + -0.0 247,700 + +1.4 247,700 + -0.6 247,701 - +0.5 247,701 - -0.4 247,701 - +0.7 247,701 - -0.4 247,701 - +0.2 247,701 - +0.5 247,731 + +0.2 247,731 + +0.4 247,731 + +1.1 247,731 + -0.4 247,731 + +0.7 247,731 + +0.7 247,731 + -0.4 247,731 + -0.9 247,731 + -0.7 247,731 + +1.3 247,732 - -0.4 247,732 - -0.2 247,732 - +1.3 247,732 - -0.7 247,732 - +0.2 247,732 - +0.3 247,732 - -0.1 247,732 - -0.3 247,733 + +0.5 247,733 + -0.2 247,733 + -0.1 247,733 + +0.6 247,733 + +0.6 247,733 + +0.4 247,733 + -0.6 247,733 + +0.9 247,733 + -0.2 247,733 + +0.5 247,733 + +0.3 247,733 + +0.5 247,734 - +1.1 247,734 - +2.7 247,734 - -0.4 247,734 - -0.3 247,734 - -0.3 247,734 - +1.2 247,734 - +0.7 247,734 - +0.8 247,734 - +0.4 247,734 - +0.4 247,734 - -0.3 247,734 - -0.8 247,734 - -1.1 247,734 - +0.2 247,792 - -0.4 247,792 - -0.6 247,868 + +0.3 247,868 + -0.2 247,868 + +0.3 247,868 + +0.1 247,869 - +0.9 247,869 - -0.3 247,869 - -0.7 247,869 - -0.6 247,869 - +0.1 247,869 - -0.0 247,922 + -0.7 247,922 + +0.2 247,922 + -0.7 247,922 + +1.0 247,922 + -0.4 247,922 + -0.2 247,922 + +0.2 247,922 + -0.0 247,922 + -0.5 247,923 - -0.5 247,923 - -1.0 247,923 - +0.5 247,923 - -0.8 247,923 - -1.0 247,977 + +0.3 248,211 - Ac3H11_2028 0.23 -0.3 248,282 + Ac3H11_2028 0.27 +0.3 248,282 + Ac3H11_2028 0.27 +0.2 248,282 + Ac3H11_2028 0.27 +1.4 248,282 + Ac3H11_2028 0.27 -0.1 249,310 + Ac3H11_2028 0.90 -0.4 249,311 - Ac3H11_2028 0.90 +0.9 249,401 + -0.5 249,401 + +0.5 249,401 + +0.5 249,401 + +0.0 249,401 + +0.1 249,502 + +1.4 249,503 - -0.8 249,524 + -0.6 249,524 + -0.1 249,525 - -2.0 249,630 + -1.0 249,630 + -0.4 249,839 + Ac3H11_2029 0.18 -1.3 249,840 - Ac3H11_2029 0.18 -1.6 249,840 - Ac3H11_2029 0.18 +0.2 250,137 - Ac3H11_2029 0.39 -1.1 250,202 + Ac3H11_2029 0.44 -0.5 250,202 + Ac3H11_2029 0.44 -0.4 250,202 + Ac3H11_2029 0.44 -1.3 250,202 + Ac3H11_2029 0.44 -2.2 250,203 - Ac3H11_2029 0.44 -1.0 250,203 - Ac3H11_2029 0.44 -0.7
Or see this region's nucleotide sequence