Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1569

Experiment: Chloramphenicol 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_1568 and Ac3H11_1569 overlap by 1 nucleotidesAc3H11_1569 and Ac3H11_1570 are separated by 513 nucleotides Ac3H11_1568 - Signal peptidase I (EC 3.4.21.89), at 150,188 to 151,162 _1568 Ac3H11_1569 - Translation elongation factor LepA, at 151,162 to 152,970 _1569 Ac3H11_1570 - HtrA protease/chaperone protein, at 153,484 to 154,953 _1570 Position (kb) 151 152 153Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 150.163 kb on - strandat 150.163 kb on - strandat 150.163 kb on - strandat 150.163 kb on - strandat 150.163 kb on - strandat 150.163 kb on - strandat 150.163 kb on - strandat 150.163 kb on - strandat 150.163 kb on - strandat 150.163 kb on - strandat 150.163 kb on - strandat 150.163 kb on - strandat 150.163 kb on - strandat 150.163 kb on - strandat 150.163 kb on - strandat 151.282 kb on - strandat 151.383 kb on - strand, within Ac3H11_1569at 151.383 kb on - strand, within Ac3H11_1569at 151.383 kb on - strand, within Ac3H11_1569at 151.383 kb on - strand, within Ac3H11_1569at 151.383 kb on - strand, within Ac3H11_1569at 151.383 kb on - strand, within Ac3H11_1569at 151.383 kb on - strand, within Ac3H11_1569at 151.383 kb on - strand, within Ac3H11_1569at 151.383 kb on - strand, within Ac3H11_1569at 151.383 kb on - strand, within Ac3H11_1569at 151.383 kb on - strand, within Ac3H11_1569at 151.383 kb on - strand, within Ac3H11_1569at 151.421 kb on - strand, within Ac3H11_1569at 151.421 kb on - strand, within Ac3H11_1569at 151.437 kb on - strand, within Ac3H11_1569at 151.530 kb on - strand, within Ac3H11_1569at 151.560 kb on - strand, within Ac3H11_1569at 151.626 kb on - strand, within Ac3H11_1569at 151.653 kb on - strand, within Ac3H11_1569at 151.713 kb on - strand, within Ac3H11_1569at 151.713 kb on - strand, within Ac3H11_1569at 151.728 kb on - strand, within Ac3H11_1569at 151.728 kb on - strand, within Ac3H11_1569at 151.728 kb on - strand, within Ac3H11_1569at 151.728 kb on - strand, within Ac3H11_1569at 151.728 kb on - strand, within Ac3H11_1569at 151.728 kb on - strand, within Ac3H11_1569at 151.728 kb on - strand, within Ac3H11_1569at 151.728 kb on - strand, within Ac3H11_1569at 151.728 kb on - strand, within Ac3H11_1569at 151.728 kb on - strand, within Ac3H11_1569at 151.728 kb on - strand, within Ac3H11_1569at 151.839 kb on - strand, within Ac3H11_1569at 151.977 kb on - strand, within Ac3H11_1569at 152.055 kb on - strand, within Ac3H11_1569at 152.202 kb on - strand, within Ac3H11_1569at 152.202 kb on - strand, within Ac3H11_1569at 152.202 kb on - strand, within Ac3H11_1569at 152.202 kb on - strand, within Ac3H11_1569at 152.277 kb on - strand, within Ac3H11_1569at 152.277 kb on - strand, within Ac3H11_1569at 152.364 kb on - strand, within Ac3H11_1569at 152.364 kb on - strand, within Ac3H11_1569at 152.364 kb on - strand, within Ac3H11_1569at 152.364 kb on - strand, within Ac3H11_1569at 152.364 kb on - strand, within Ac3H11_1569at 152.364 kb on - strand, within Ac3H11_1569at 152.622 kb on - strand, within Ac3H11_1569at 152.622 kb on - strand, within Ac3H11_1569at 152.622 kb on - strand, within Ac3H11_1569at 152.622 kb on - strand, within Ac3H11_1569at 152.622 kb on - strand, within Ac3H11_1569at 152.622 kb on - strand, within Ac3H11_1569at 152.715 kb on - strandat 152.760 kb on - strand, within Ac3H11_1569at 152.760 kb on - strand, within Ac3H11_1569at 152.760 kb on - strand, within Ac3H11_1569at 152.760 kb on - strand, within Ac3H11_1569at 152.760 kb on - strand, within Ac3H11_1569at 152.784 kb on - strand, within Ac3H11_1569at 152.784 kb on - strand, within Ac3H11_1569at 152.784 kb on - strand, within Ac3H11_1569at 152.784 kb on - strand, within Ac3H11_1569at 153.280 kb on + strandat 153.281 kb on - strandat 153.281 kb on - strandat 153.281 kb on - strandat 153.288 kb on + strandat 153.288 kb on + strandat 153.288 kb on + strandat 153.289 kb on - strandat 153.289 kb on - strandat 153.289 kb on - strandat 153.310 kb on - strandat 153.310 kb on - strandat 153.315 kb on - strandat 153.315 kb on - strandat 153.330 kb on + strandat 153.331 kb on - strandat 153.347 kb on - strandat 153.356 kb on + strandat 153.357 kb on - strandat 153.363 kb on + strandat 153.364 kb on - strandat 153.364 kb on - strandat 153.364 kb on - strandat 153.364 kb on - strandat 153.364 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml
remove
150,163 - +0.3
150,163 - +0.0
150,163 - -1.6
150,163 - -0.4
150,163 - -0.2
150,163 - -0.5
150,163 - +0.2
150,163 - -0.0
150,163 - -0.8
150,163 - +0.3
150,163 - -1.1
150,163 - +0.3
150,163 - -0.3
150,163 - -0.2
150,163 - +0.4
151,282 - -1.4
151,383 - Ac3H11_1569 0.12 -0.3
151,383 - Ac3H11_1569 0.12 +0.2
151,383 - Ac3H11_1569 0.12 -0.2
151,383 - Ac3H11_1569 0.12 -0.1
151,383 - Ac3H11_1569 0.12 -2.6
151,383 - Ac3H11_1569 0.12 +0.6
151,383 - Ac3H11_1569 0.12 -0.4
151,383 - Ac3H11_1569 0.12 -1.3
151,383 - Ac3H11_1569 0.12 -0.2
151,383 - Ac3H11_1569 0.12 -1.2
151,383 - Ac3H11_1569 0.12 +1.4
151,383 - Ac3H11_1569 0.12 +1.0
151,421 - Ac3H11_1569 0.14 -0.4
151,421 - Ac3H11_1569 0.14 -1.6
151,437 - Ac3H11_1569 0.15 +0.6
151,530 - Ac3H11_1569 0.20 -0.4
151,560 - Ac3H11_1569 0.22 +0.2
151,626 - Ac3H11_1569 0.26 -1.1
151,653 - Ac3H11_1569 0.27 -0.6
151,713 - Ac3H11_1569 0.30 -1.5
151,713 - Ac3H11_1569 0.30 -1.2
151,728 - Ac3H11_1569 0.31 -0.8
151,728 - Ac3H11_1569 0.31 -1.3
151,728 - Ac3H11_1569 0.31 +1.8
151,728 - Ac3H11_1569 0.31 -2.6
151,728 - Ac3H11_1569 0.31 -1.9
151,728 - Ac3H11_1569 0.31 -2.3
151,728 - Ac3H11_1569 0.31 +0.4
151,728 - Ac3H11_1569 0.31 -1.6
151,728 - Ac3H11_1569 0.31 -2.3
151,728 - Ac3H11_1569 0.31 +1.4
151,728 - Ac3H11_1569 0.31 -0.2
151,839 - Ac3H11_1569 0.37 +1.4
151,977 - Ac3H11_1569 0.45 -0.9
152,055 - Ac3H11_1569 0.49 -0.8
152,202 - Ac3H11_1569 0.57 -0.6
152,202 - Ac3H11_1569 0.57 -1.1
152,202 - Ac3H11_1569 0.57 -0.8
152,202 - Ac3H11_1569 0.57 -2.3
152,277 - Ac3H11_1569 0.62 -2.3
152,277 - Ac3H11_1569 0.62 -2.1
152,364 - Ac3H11_1569 0.66 -1.4
152,364 - Ac3H11_1569 0.66 -2.7
152,364 - Ac3H11_1569 0.66 -1.8
152,364 - Ac3H11_1569 0.66 -0.2
152,364 - Ac3H11_1569 0.66 -1.6
152,364 - Ac3H11_1569 0.66 +0.6
152,622 - Ac3H11_1569 0.81 -1.5
152,622 - Ac3H11_1569 0.81 -0.6
152,622 - Ac3H11_1569 0.81 +1.6
152,622 - Ac3H11_1569 0.81 -1.6
152,622 - Ac3H11_1569 0.81 -0.9
152,622 - Ac3H11_1569 0.81 +1.4
152,715 - +2.0
152,760 - Ac3H11_1569 0.88 -0.3
152,760 - Ac3H11_1569 0.88 -2.9
152,760 - Ac3H11_1569 0.88 -0.4
152,760 - Ac3H11_1569 0.88 -0.8
152,760 - Ac3H11_1569 0.88 +0.8
152,784 - Ac3H11_1569 0.90 -0.4
152,784 - Ac3H11_1569 0.90 +1.8
152,784 - Ac3H11_1569 0.90 -1.9
152,784 - Ac3H11_1569 0.90 -2.8
153,280 + -1.4
153,281 - +0.0
153,281 - -0.8
153,281 - -0.7
153,288 + +1.7
153,288 + -0.5
153,288 + -0.4
153,289 - -0.4
153,289 - -1.6
153,289 - -0.3
153,310 - -0.4
153,310 - +0.3
153,315 - +0.6
153,315 - -0.8
153,330 + +1.7
153,331 - +0.3
153,347 - +0.2
153,356 + -0.5
153,357 - +0.1
153,363 + +0.3
153,364 - -0.0
153,364 - +0.4
153,364 - -0.6
153,364 - +0.5
153,364 - +0.2

Or see this region's nucleotide sequence