Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1265 and Ac3H11_1266 are separated by 27 nucleotides Ac3H11_1266 and Ac3H11_1267 overlap by 4 nucleotides Ac3H11_1267 and Ac3H11_1268 are separated by 121 nucleotides
Ac3H11_1265 - FIG00931207: hypothetical protein, at 84,560 to 85,276
_1265
Ac3H11_1266 - Biotin--protein ligase (EC 6.3.4.9, EC 6.3.4.10, EC 6.3.4.11, EC 6.3.4.15), at 85,304 to 86,158
_1266
Ac3H11_1267 - Proteins containing SET domain, at 86,155 to 86,709
_1267
Ac3H11_1268 - DNA topoisomerase III, Burkholderia type (EC 5.99.1.2), at 86,831 to 89,743
_1268
Position (kb) 86
87 Strain fitness (log2 ratio) -2
-1
0
1 at 85.231 kb on - strand at 85.305 kb on + strand at 85.305 kb on + strand at 85.306 kb on - strand at 86.283 kb on - strand, within Ac3H11_1267 at 86.306 kb on + strand, within Ac3H11_1267 at 86.330 kb on + strand, within Ac3H11_1267 at 86.336 kb on + strand, within Ac3H11_1267 at 86.337 kb on - strand, within Ac3H11_1267 at 86.337 kb on - strand, within Ac3H11_1267 at 86.337 kb on - strand, within Ac3H11_1267 at 86.499 kb on - strand, within Ac3H11_1267 at 86.499 kb on - strand, within Ac3H11_1267 at 86.577 kb on - strand, within Ac3H11_1267 at 86.577 kb on - strand, within Ac3H11_1267 at 86.577 kb on - strand, within Ac3H11_1267 at 86.577 kb on - strand, within Ac3H11_1267 at 86.577 kb on - strand, within Ac3H11_1267 at 86.605 kb on - strand, within Ac3H11_1267 at 86.724 kb on + strand at 86.725 kb on - strand at 86.733 kb on + strand at 86.733 kb on + strand at 86.780 kb on + strand at 86.780 kb on + strand at 86.780 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 85,231 - -0.3 85,305 + +0.7 85,305 + +0.9 85,306 - -0.4 86,283 - Ac3H11_1267 0.23 -0.2 86,306 + Ac3H11_1267 0.27 -0.2 86,330 + Ac3H11_1267 0.32 -0.4 86,336 + Ac3H11_1267 0.33 -1.9 86,337 - Ac3H11_1267 0.33 -0.2 86,337 - Ac3H11_1267 0.33 -0.6 86,337 - Ac3H11_1267 0.33 -1.2 86,499 - Ac3H11_1267 0.62 +0.2 86,499 - Ac3H11_1267 0.62 -0.6 86,577 - Ac3H11_1267 0.76 -0.1 86,577 - Ac3H11_1267 0.76 -0.3 86,577 - Ac3H11_1267 0.76 -0.0 86,577 - Ac3H11_1267 0.76 +0.5 86,577 - Ac3H11_1267 0.76 +0.5 86,605 - Ac3H11_1267 0.81 -2.0 86,724 + -2.6 86,725 - +0.2 86,733 + -0.3 86,733 + +0.4 86,780 + +1.5 86,780 + +0.6 86,780 + -0.4
Or see this region's nucleotide sequence