Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1176 and Ac3H11_1177 are separated by 112 nucleotides Ac3H11_1177 and Ac3H11_1178 overlap by 4 nucleotides Ac3H11_1178 and Ac3H11_1179 are separated by 9 nucleotides
Ac3H11_1176 - TRAP transporter solute receptor, unknown substrate 3, at 13,799 to 14,836
_1176
Ac3H11_1177 - TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 3, at 14,949 to 15,431
_1177
Ac3H11_1178 - TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3, at 15,428 to 16,747
_1178
Ac3H11_1179 - putative exported protein, at 16,757 to 17,734
_1179
Position (kb) 15
16
17 Strain fitness (log2 ratio) -2
-1
0
1 at 14.510 kb on + strand, within Ac3H11_1176 at 14.510 kb on + strand, within Ac3H11_1176 at 14.511 kb on - strand, within Ac3H11_1176 at 14.511 kb on - strand, within Ac3H11_1176 at 14.549 kb on + strand, within Ac3H11_1176 at 14.550 kb on - strand, within Ac3H11_1176 at 14.834 kb on + strand at 14.834 kb on + strand at 14.835 kb on - strand at 14.835 kb on - strand at 14.835 kb on - strand at 14.835 kb on - strand at 14.835 kb on - strand at 15.079 kb on - strand, within Ac3H11_1177 at 15.079 kb on - strand, within Ac3H11_1177 at 15.079 kb on - strand, within Ac3H11_1177 at 15.336 kb on + strand, within Ac3H11_1177 at 15.337 kb on - strand, within Ac3H11_1177 at 15.337 kb on - strand, within Ac3H11_1177 at 15.533 kb on + strand at 15.540 kb on - strand at 15.606 kb on - strand, within Ac3H11_1178 at 15.837 kb on - strand, within Ac3H11_1178 at 15.837 kb on - strand, within Ac3H11_1178 at 15.920 kb on + strand, within Ac3H11_1178 at 15.921 kb on - strand, within Ac3H11_1178 at 15.999 kb on - strand, within Ac3H11_1178 at 15.999 kb on - strand, within Ac3H11_1178 at 15.999 kb on - strand, within Ac3H11_1178 at 16.019 kb on + strand, within Ac3H11_1178 at 16.054 kb on + strand, within Ac3H11_1178 at 16.055 kb on - strand, within Ac3H11_1178 at 16.142 kb on + strand, within Ac3H11_1178 at 16.143 kb on - strand, within Ac3H11_1178 at 16.143 kb on - strand, within Ac3H11_1178 at 16.143 kb on - strand, within Ac3H11_1178 at 16.386 kb on - strand, within Ac3H11_1178 at 16.415 kb on + strand, within Ac3H11_1178 at 16.415 kb on + strand, within Ac3H11_1178 at 16.416 kb on - strand, within Ac3H11_1178 at 16.416 kb on - strand, within Ac3H11_1178 at 16.416 kb on - strand, within Ac3H11_1178 at 16.601 kb on + strand, within Ac3H11_1178 at 16.601 kb on + strand, within Ac3H11_1178 at 16.601 kb on + strand, within Ac3H11_1178 at 16.601 kb on + strand, within Ac3H11_1178 at 16.602 kb on - strand, within Ac3H11_1178 at 16.602 kb on - strand, within Ac3H11_1178 at 16.602 kb on - strand, within Ac3H11_1178 at 16.602 kb on - strand, within Ac3H11_1178 at 16.646 kb on + strand at 16.646 kb on + strand at 16.646 kb on + strand at 16.646 kb on + strand at 16.647 kb on - strand at 16.647 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 14,510 + Ac3H11_1176 0.68 -1.2 14,510 + Ac3H11_1176 0.68 +0.2 14,511 - Ac3H11_1176 0.69 -0.9 14,511 - Ac3H11_1176 0.69 -0.7 14,549 + Ac3H11_1176 0.72 +0.3 14,550 - Ac3H11_1176 0.72 -0.9 14,834 + +0.6 14,834 + +0.2 14,835 - +0.0 14,835 - +0.5 14,835 - +0.1 14,835 - -0.3 14,835 - +0.1 15,079 - Ac3H11_1177 0.27 -0.2 15,079 - Ac3H11_1177 0.27 +1.3 15,079 - Ac3H11_1177 0.27 -0.4 15,336 + Ac3H11_1177 0.80 -0.6 15,337 - Ac3H11_1177 0.80 +0.3 15,337 - Ac3H11_1177 0.80 +0.1 15,533 + -1.1 15,540 - -0.4 15,606 - Ac3H11_1178 0.13 +0.6 15,837 - Ac3H11_1178 0.31 +1.0 15,837 - Ac3H11_1178 0.31 -0.3 15,920 + Ac3H11_1178 0.37 -1.2 15,921 - Ac3H11_1178 0.37 +0.7 15,999 - Ac3H11_1178 0.43 +0.2 15,999 - Ac3H11_1178 0.43 +0.5 15,999 - Ac3H11_1178 0.43 +0.3 16,019 + Ac3H11_1178 0.45 -0.2 16,054 + Ac3H11_1178 0.47 +0.0 16,055 - Ac3H11_1178 0.47 +1.0 16,142 + Ac3H11_1178 0.54 +0.1 16,143 - Ac3H11_1178 0.54 +0.2 16,143 - Ac3H11_1178 0.54 -0.8 16,143 - Ac3H11_1178 0.54 -0.3 16,386 - Ac3H11_1178 0.73 -0.6 16,415 + Ac3H11_1178 0.75 -0.5 16,415 + Ac3H11_1178 0.75 +0.3 16,416 - Ac3H11_1178 0.75 -1.0 16,416 - Ac3H11_1178 0.75 +0.5 16,416 - Ac3H11_1178 0.75 -0.5 16,601 + Ac3H11_1178 0.89 +0.6 16,601 + Ac3H11_1178 0.89 -0.3 16,601 + Ac3H11_1178 0.89 -0.5 16,601 + Ac3H11_1178 0.89 +0.7 16,602 - Ac3H11_1178 0.89 -0.0 16,602 - Ac3H11_1178 0.89 +0.9 16,602 - Ac3H11_1178 0.89 -2.3 16,602 - Ac3H11_1178 0.89 +0.1 16,646 + -1.1 16,646 + +0.5 16,646 + -0.8 16,646 + -0.0 16,647 - +0.5 16,647 - -1.4
Or see this region's nucleotide sequence