Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS29375

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS29370 and AZOBR_RS29375 are separated by 716 nucleotidesAZOBR_RS29375 and AZOBR_RS29380 are separated by 26 nucleotidesAZOBR_RS29380 and AZOBR_RS29385 are separated by 79 nucleotides AZOBR_RS29370: AZOBR_RS29370 - integrase, at 709,955 to 710,959 _RS29370 AZOBR_RS29375: AZOBR_RS29375 - protein norD, at 711,676 to 713,598 _RS29375 AZOBR_RS29380: AZOBR_RS29380 - ATPase AAA, at 713,625 to 714,437 _RS29380 AZOBR_RS29385: AZOBR_RS29385 - nitric oxide reductase, at 714,517 to 715,869 _RS29385 Position (kb) 711 712 713 714Strain fitness (log2 ratio) -1 0 1at 710.924 kb on + strandat 710.940 kb on + strandat 710.941 kb on - strandat 710.957 kb on + strandat 710.958 kb on - strandat 710.982 kb on + strandat 710.982 kb on + strandat 710.982 kb on + strandat 710.982 kb on + strandat 710.982 kb on + strandat 710.982 kb on + strandat 711.007 kb on - strandat 711.209 kb on + strandat 711.210 kb on - strandat 711.210 kb on - strandat 711.210 kb on - strandat 711.303 kb on + strandat 711.304 kb on - strandat 711.304 kb on - strandat 711.304 kb on - strandat 711.414 kb on - strandat 711.582 kb on - strandat 711.667 kb on + strandat 711.667 kb on + strandat 711.668 kb on - strandat 711.669 kb on + strandat 711.670 kb on - strandat 711.670 kb on - strandat 711.768 kb on - strandat 711.862 kb on + strandat 711.862 kb on + strandat 711.863 kb on - strandat 711.869 kb on + strand, within AZOBR_RS29375at 711.882 kb on - strand, within AZOBR_RS29375at 711.996 kb on - strand, within AZOBR_RS29375at 711.996 kb on - strand, within AZOBR_RS29375at 712.278 kb on - strand, within AZOBR_RS29375at 712.511 kb on + strand, within AZOBR_RS29375at 712.541 kb on + strand, within AZOBR_RS29375at 712.940 kb on + strand, within AZOBR_RS29375at 713.268 kb on - strand, within AZOBR_RS29375at 713.983 kb on + strand, within AZOBR_RS29380at 713.983 kb on + strand, within AZOBR_RS29380at 714.121 kb on + strand, within AZOBR_RS29380at 714.248 kb on - strand, within AZOBR_RS29380at 714.248 kb on - strand, within AZOBR_RS29380at 714.385 kb on + strandat 714.385 kb on + strandat 714.385 kb on + strandat 714.386 kb on - strandat 714.386 kb on - strandat 714.386 kb on - strandat 714.386 kb on - strandat 714.388 kb on + strandat 714.389 kb on - strandat 714.591 kb on - strandat 714.591 kb on - strandat 714.591 kb on - strandat 714.596 kb on + strandat 714.597 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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710,924 + -0.0
710,940 + +0.2
710,941 - -1.4
710,957 + +0.4
710,958 - -0.6
710,982 + +0.7
710,982 + +0.1
710,982 + -0.3
710,982 + +1.3
710,982 + -0.0
710,982 + -0.3
711,007 - -0.1
711,209 + -0.9
711,210 - +0.0
711,210 - -0.3
711,210 - -1.7
711,303 + +0.9
711,304 - -0.3
711,304 - +0.1
711,304 - -0.5
711,414 - -0.2
711,582 - +0.7
711,667 + -0.5
711,667 + +0.3
711,668 - -0.1
711,669 + -0.0
711,670 - +1.6
711,670 - +1.2
711,768 - +0.7
711,862 + +0.4
711,862 + +0.7
711,863 - -0.4
711,869 + AZOBR_RS29375 0.10 +0.4
711,882 - AZOBR_RS29375 0.11 +0.0
711,996 - AZOBR_RS29375 0.17 +0.7
711,996 - AZOBR_RS29375 0.17 -0.1
712,278 - AZOBR_RS29375 0.31 +0.9
712,511 + AZOBR_RS29375 0.43 +0.2
712,541 + AZOBR_RS29375 0.45 +0.1
712,940 + AZOBR_RS29375 0.66 +0.1
713,268 - AZOBR_RS29375 0.83 +0.8
713,983 + AZOBR_RS29380 0.44 -0.2
713,983 + AZOBR_RS29380 0.44 +0.2
714,121 + AZOBR_RS29380 0.61 -0.4
714,248 - AZOBR_RS29380 0.77 -1.7
714,248 - AZOBR_RS29380 0.77 -1.5
714,385 + +0.0
714,385 + -0.2
714,385 + +0.5
714,386 - +0.3
714,386 - -0.0
714,386 - +1.0
714,386 - -0.1
714,388 + +0.2
714,389 - -0.5
714,591 - +0.2
714,591 - +0.1
714,591 - +0.2
714,596 + +0.3
714,597 - +1.0

Or see this region's nucleotide sequence