Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS21290

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS21280 and AZOBR_RS21285 overlap by 112 nucleotidesAZOBR_RS21285 and AZOBR_RS21290 are separated by 200 nucleotidesAZOBR_RS21290 and AZOBR_RS21295 are separated by 49 nucleotidesAZOBR_RS21295 and AZOBR_RS21300 are separated by 216 nucleotides AZOBR_RS21280: AZOBR_RS21280 - exported protein of unknown function, at 1,557,200 to 1,558,558 _RS21280 AZOBR_RS21285: AZOBR_RS21285 - hypothetical protein, at 1,558,447 to 1,559,226 _RS21285 AZOBR_RS21290: AZOBR_RS21290 - hypothetical protein, at 1,559,427 to 1,559,948 _RS21290 AZOBR_RS21295: AZOBR_RS21295 - conserved exported protein of unknown function, at 1,559,998 to 1,560,513 _RS21295 AZOBR_RS21300: AZOBR_RS21300 - conserved exported protein of unknown function, at 1,560,730 to 1,561,494 _RS21300 Position (kb) 1559 1560Strain fitness (log2 ratio) -1 0 1at 1558.625 kb on - strand, within AZOBR_RS21285at 1559.512 kb on - strand, within AZOBR_RS21290at 1559.535 kb on + strand, within AZOBR_RS21290at 1559.895 kb on + strand, within AZOBR_RS21290at 1559.896 kb on - strandat 1559.896 kb on - strandat 1559.896 kb on - strandat 1560.661 kb on + strandat 1560.662 kb on - strandat 1560.662 kb on - strandat 1560.662 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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1,558,625 - AZOBR_RS21285 0.23 +0.3
1,559,512 - AZOBR_RS21290 0.16 +0.9
1,559,535 + AZOBR_RS21290 0.21 +0.5
1,559,895 + AZOBR_RS21290 0.90 +0.3
1,559,896 - +0.9
1,559,896 - +0.4
1,559,896 - -0.2
1,560,661 + +0.1
1,560,662 - -0.5
1,560,662 - +0.3
1,560,662 - +0.7

Or see this region's nucleotide sequence