Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23565

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23560 and AO353_23565 are separated by 14 nucleotidesAO353_23565 and AO353_23570 overlap by 35 nucleotidesAO353_23570 and AO353_23575 are separated by 89 nucleotides AO353_23560: AO353_23560 - lysine decarboxylase, at 5,159,218 to 5,161,473 _23560 AO353_23565: AO353_23565 - GNAT family acetyltransferase, at 5,161,488 to 5,162,102 _23565 AO353_23570: AO353_23570 - LysR family transcriptional regulator, at 5,162,068 to 5,162,961 _23570 AO353_23575: AO353_23575 - hypothetical protein, at 5,163,051 to 5,163,287 _23575 Position (kb) 5161 5162 5163Strain fitness (log2 ratio) -2 -1 0 1 2at 5160.515 kb on - strand, within AO353_23560at 5160.698 kb on + strand, within AO353_23560at 5160.698 kb on + strand, within AO353_23560at 5160.698 kb on + strand, within AO353_23560at 5160.698 kb on + strand, within AO353_23560at 5160.699 kb on - strand, within AO353_23560at 5160.699 kb on - strand, within AO353_23560at 5160.699 kb on - strand, within AO353_23560at 5160.699 kb on - strand, within AO353_23560at 5160.699 kb on - strandat 5160.699 kb on - strand, within AO353_23560at 5160.775 kb on + strand, within AO353_23560at 5160.775 kb on + strand, within AO353_23560at 5160.919 kb on + strand, within AO353_23560at 5160.919 kb on + strand, within AO353_23560at 5160.919 kb on + strand, within AO353_23560at 5160.919 kb on + strand, within AO353_23560at 5160.920 kb on - strand, within AO353_23560at 5160.952 kb on - strand, within AO353_23560at 5160.960 kb on + strand, within AO353_23560at 5160.960 kb on + strand, within AO353_23560at 5160.960 kb on + strand, within AO353_23560at 5161.007 kb on - strand, within AO353_23560at 5161.007 kb on - strand, within AO353_23560at 5161.007 kb on - strand, within AO353_23560at 5161.007 kb on - strand, within AO353_23560at 5161.146 kb on + strand, within AO353_23560at 5161.146 kb on + strand, within AO353_23560at 5161.147 kb on - strand, within AO353_23560at 5161.156 kb on + strand, within AO353_23560at 5161.156 kb on + strand, within AO353_23560at 5161.157 kb on - strand, within AO353_23560at 5161.157 kb on - strand, within AO353_23560at 5161.157 kb on - strand, within AO353_23560at 5161.157 kb on - strand, within AO353_23560at 5161.157 kb on - strand, within AO353_23560at 5161.157 kb on - strand, within AO353_23560at 5161.351 kb on + strandat 5161.447 kb on + strandat 5161.447 kb on + strandat 5161.447 kb on + strandat 5161.447 kb on + strandat 5161.447 kb on + strandat 5161.448 kb on - strandat 5161.448 kb on - strandat 5161.487 kb on + strandat 5161.488 kb on - strandat 5161.557 kb on + strand, within AO353_23565at 5161.557 kb on + strand, within AO353_23565at 5161.557 kb on + strand, within AO353_23565at 5161.557 kb on + strand, within AO353_23565at 5161.558 kb on - strand, within AO353_23565at 5161.558 kb on - strand, within AO353_23565at 5161.558 kb on - strand, within AO353_23565at 5161.558 kb on - strand, within AO353_23565at 5161.558 kb on - strand, within AO353_23565at 5161.558 kb on - strand, within AO353_23565at 5161.558 kb on - strand, within AO353_23565at 5161.558 kb on - strand, within AO353_23565at 5161.558 kb on - strand, within AO353_23565at 5161.559 kb on + strand, within AO353_23565at 5161.559 kb on + strand, within AO353_23565at 5161.559 kb on + strand, within AO353_23565at 5161.559 kb on + strand, within AO353_23565at 5161.559 kb on + strand, within AO353_23565at 5161.560 kb on - strand, within AO353_23565at 5161.560 kb on - strand, within AO353_23565at 5161.560 kb on - strand, within AO353_23565at 5161.560 kb on - strand, within AO353_23565at 5161.560 kb on - strand, within AO353_23565at 5161.775 kb on + strand, within AO353_23565at 5161.919 kb on + strand, within AO353_23565at 5161.920 kb on - strand, within AO353_23565at 5161.944 kb on + strand, within AO353_23565at 5161.959 kb on + strand, within AO353_23565at 5161.959 kb on + strand, within AO353_23565at 5161.959 kb on + strand, within AO353_23565at 5162.103 kb on + strandat 5162.104 kb on - strandat 5162.162 kb on + strand, within AO353_23570at 5162.233 kb on - strand, within AO353_23570at 5162.700 kb on - strand, within AO353_23570at 5162.700 kb on - strand, within AO353_23570at 5162.707 kb on + strand, within AO353_23570at 5162.707 kb on + strand, within AO353_23570at 5162.748 kb on - strand, within AO353_23570at 5162.748 kb on - strand, within AO353_23570at 5162.953 kb on + strandat 5162.954 kb on - strandat 5162.954 kb on - strandat 5163.027 kb on - strandat 5163.027 kb on - strandat 5163.027 kb on - strandat 5163.041 kb on + strandat 5163.053 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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5,160,515 - AO353_23560 0.57 +1.0
5,160,698 + AO353_23560 0.66 +1.5
5,160,698 + AO353_23560 0.66 +0.0
5,160,698 + AO353_23560 0.66 -0.8
5,160,698 + AO353_23560 0.66 +1.0
5,160,699 - AO353_23560 0.66 +0.3
5,160,699 - AO353_23560 0.66 -1.4
5,160,699 - AO353_23560 0.66 +0.6
5,160,699 - AO353_23560 0.66 -1.3
5,160,699 - +1.2
5,160,699 - AO353_23560 0.66 +0.8
5,160,775 + AO353_23560 0.69 +0.4
5,160,775 + AO353_23560 0.69 -0.7
5,160,919 + AO353_23560 0.75 -0.3
5,160,919 + AO353_23560 0.75 -0.1
5,160,919 + AO353_23560 0.75 -0.9
5,160,919 + AO353_23560 0.75 -0.0
5,160,920 - AO353_23560 0.75 +0.6
5,160,952 - AO353_23560 0.77 +0.4
5,160,960 + AO353_23560 0.77 +0.2
5,160,960 + AO353_23560 0.77 +0.9
5,160,960 + AO353_23560 0.77 +0.8
5,161,007 - AO353_23560 0.79 -0.0
5,161,007 - AO353_23560 0.79 -0.2
5,161,007 - AO353_23560 0.79 -0.8
5,161,007 - AO353_23560 0.79 +1.3
5,161,146 + AO353_23560 0.85 -0.5
5,161,146 + AO353_23560 0.85 -0.2
5,161,147 - AO353_23560 0.86 -0.2
5,161,156 + AO353_23560 0.86 +0.6
5,161,156 + AO353_23560 0.86 -1.3
5,161,157 - AO353_23560 0.86 +0.8
5,161,157 - AO353_23560 0.86 +0.4
5,161,157 - AO353_23560 0.86 +0.1
5,161,157 - AO353_23560 0.86 -0.0
5,161,157 - AO353_23560 0.86 +0.1
5,161,157 - AO353_23560 0.86 -0.8
5,161,351 + +0.3
5,161,447 + -0.8
5,161,447 + +0.3
5,161,447 + +0.8
5,161,447 + -1.7
5,161,447 + -1.3
5,161,448 - +0.2
5,161,448 - +0.9
5,161,487 + +0.3
5,161,488 - -0.8
5,161,557 + AO353_23565 0.11 +0.6
5,161,557 + AO353_23565 0.11 -0.1
5,161,557 + AO353_23565 0.11 -2.1
5,161,557 + AO353_23565 0.11 -1.5
5,161,558 - AO353_23565 0.11 +0.2
5,161,558 - AO353_23565 0.11 -0.4
5,161,558 - AO353_23565 0.11 -0.2
5,161,558 - AO353_23565 0.11 -0.1
5,161,558 - AO353_23565 0.11 -0.4
5,161,558 - AO353_23565 0.11 -0.9
5,161,558 - AO353_23565 0.11 +1.6
5,161,558 - AO353_23565 0.11 -1.4
5,161,558 - AO353_23565 0.11 -0.4
5,161,559 + AO353_23565 0.12 +1.9
5,161,559 + AO353_23565 0.12 -0.7
5,161,559 + AO353_23565 0.12 -0.1
5,161,559 + AO353_23565 0.12 -0.2
5,161,559 + AO353_23565 0.12 -0.3
5,161,560 - AO353_23565 0.12 -0.2
5,161,560 - AO353_23565 0.12 -1.0
5,161,560 - AO353_23565 0.12 -0.8
5,161,560 - AO353_23565 0.12 -0.5
5,161,560 - AO353_23565 0.12 -0.2
5,161,775 + AO353_23565 0.47 +0.1
5,161,919 + AO353_23565 0.70 -0.4
5,161,920 - AO353_23565 0.70 +2.0
5,161,944 + AO353_23565 0.74 -0.7
5,161,959 + AO353_23565 0.77 -1.5
5,161,959 + AO353_23565 0.77 -0.4
5,161,959 + AO353_23565 0.77 +0.8
5,162,103 + -1.8
5,162,104 - -0.7
5,162,162 + AO353_23570 0.11 +0.2
5,162,233 - AO353_23570 0.18 -1.0
5,162,700 - AO353_23570 0.71 -0.2
5,162,700 - AO353_23570 0.71 +0.8
5,162,707 + AO353_23570 0.71 +0.3
5,162,707 + AO353_23570 0.71 +0.7
5,162,748 - AO353_23570 0.76 -0.8
5,162,748 - AO353_23570 0.76 -0.3
5,162,953 + +0.2
5,162,954 - -0.9
5,162,954 - +0.2
5,163,027 - +0.4
5,163,027 - +0.4
5,163,027 - +0.3
5,163,041 + -0.9
5,163,053 - +1.0

Or see this region's nucleotide sequence