Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_14440

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_14430 and AO353_14435 are separated by 12 nucleotidesAO353_14435 and AO353_14440 are separated by 185 nucleotidesAO353_14440 and AO353_14445 overlap by 4 nucleotides AO353_14430: AO353_14430 - XRE family transcriptional regulator, at 3,200,879 to 3,201,592 _14430 AO353_14435: AO353_14435 - Rieske (2Fe-2S) protein, at 3,201,605 to 3,201,922 _14435 AO353_14440: AO353_14440 - ABC transporter substrate-binding protein, at 3,202,108 to 3,202,995 _14440 AO353_14445: AO353_14445 - ABC transporter permease, at 3,202,992 to 3,204,029 _14445 Position (kb) 3202 3203Strain fitness (log2 ratio) -2 -1 0 1at 3201.136 kb on + strand, within AO353_14430at 3201.136 kb on + strand, within AO353_14430at 3201.136 kb on + strand, within AO353_14430at 3201.136 kb on + strand, within AO353_14430at 3201.136 kb on + strand, within AO353_14430at 3201.137 kb on - strand, within AO353_14430at 3201.137 kb on - strand, within AO353_14430at 3201.137 kb on - strand, within AO353_14430at 3201.137 kb on - strand, within AO353_14430at 3201.156 kb on + strand, within AO353_14430at 3201.156 kb on + strand, within AO353_14430at 3201.157 kb on - strand, within AO353_14430at 3201.157 kb on - strand, within AO353_14430at 3201.157 kb on - strand, within AO353_14430at 3201.395 kb on - strand, within AO353_14430at 3201.395 kb on - strand, within AO353_14430at 3201.413 kb on + strand, within AO353_14430at 3201.413 kb on + strand, within AO353_14430at 3201.413 kb on + strand, within AO353_14430at 3201.413 kb on + strand, within AO353_14430at 3201.414 kb on - strand, within AO353_14430at 3201.414 kb on - strand, within AO353_14430at 3201.414 kb on - strand, within AO353_14430at 3201.414 kb on - strand, within AO353_14430at 3201.524 kb on + strandat 3201.524 kb on + strandat 3201.552 kb on + strandat 3201.552 kb on + strandat 3201.552 kb on + strandat 3201.552 kb on + strandat 3201.552 kb on + strandat 3201.553 kb on - strandat 3201.553 kb on - strandat 3201.553 kb on - strandat 3201.553 kb on - strandat 3201.553 kb on - strandat 3201.596 kb on + strandat 3201.596 kb on + strandat 3201.607 kb on - strandat 3201.607 kb on - strandat 3201.813 kb on + strand, within AO353_14435at 3201.813 kb on + strand, within AO353_14435at 3201.819 kb on + strand, within AO353_14435at 3201.819 kb on + strand, within AO353_14435at 3201.820 kb on - strand, within AO353_14435at 3201.820 kb on - strand, within AO353_14435at 3201.820 kb on - strand, within AO353_14435at 3201.820 kb on - strand, within AO353_14435at 3201.820 kb on - strand, within AO353_14435at 3201.820 kb on - strand, within AO353_14435at 3201.820 kb on - strand, within AO353_14435at 3201.820 kb on - strand, within AO353_14435at 3201.839 kb on + strand, within AO353_14435at 3201.926 kb on + strandat 3201.927 kb on - strandat 3201.927 kb on - strandat 3202.056 kb on + strandat 3202.107 kb on + strandat 3202.107 kb on + strandat 3202.119 kb on + strandat 3202.120 kb on - strandat 3202.128 kb on + strandat 3202.129 kb on - strandat 3202.129 kb on - strandat 3202.495 kb on - strand, within AO353_14440at 3202.495 kb on - strand, within AO353_14440at 3202.540 kb on + strand, within AO353_14440at 3202.540 kb on + strand, within AO353_14440at 3202.540 kb on + strand, within AO353_14440at 3202.540 kb on + strand, within AO353_14440at 3202.541 kb on - strand, within AO353_14440at 3202.541 kb on - strand, within AO353_14440at 3202.541 kb on - strand, within AO353_14440at 3202.701 kb on + strand, within AO353_14440at 3202.701 kb on + strand, within AO353_14440at 3202.701 kb on + strand, within AO353_14440at 3202.716 kb on + strand, within AO353_14440at 3202.890 kb on + strand, within AO353_14440at 3202.890 kb on + strand, within AO353_14440at 3202.891 kb on - strand, within AO353_14440at 3202.891 kb on - strand, within AO353_14440at 3202.937 kb on + strandat 3202.937 kb on + strandat 3202.938 kb on - strandat 3202.957 kb on + strandat 3202.957 kb on + strandat 3202.957 kb on + strandat 3202.958 kb on - strandat 3202.958 kb on - strandat 3202.997 kb on + strandat 3202.997 kb on + strandat 3202.997 kb on + strandat 3202.997 kb on + strandat 3202.998 kb on - strandat 3202.998 kb on - strandat 3202.998 kb on - strandat 3202.998 kb on - strandat 3203.102 kb on + strand, within AO353_14445at 3203.103 kb on - strand, within AO353_14445at 3203.198 kb on + strand, within AO353_14445at 3203.198 kb on + strand, within AO353_14445at 3203.199 kb on - strand, within AO353_14445at 3203.382 kb on + strand, within AO353_14445at 3203.382 kb on + strand, within AO353_14445at 3203.382 kb on + strand, within AO353_14445at 3203.382 kb on + strand, within AO353_14445at 3203.383 kb on - strand, within AO353_14445at 3203.383 kb on - strand, within AO353_14445at 3203.538 kb on + strand, within AO353_14445at 3203.538 kb on + strand, within AO353_14445at 3203.538 kb on + strand, within AO353_14445at 3203.538 kb on + strand, within AO353_14445at 3203.539 kb on - strand, within AO353_14445at 3203.539 kb on - strand, within AO353_14445at 3203.539 kb on - strand, within AO353_14445at 3203.539 kb on - strand, within AO353_14445at 3203.564 kb on + strand, within AO353_14445at 3203.564 kb on + strand, within AO353_14445at 3203.565 kb on - strand, within AO353_14445at 3203.607 kb on + strand, within AO353_14445at 3203.607 kb on + strand, within AO353_14445at 3203.607 kb on + strand, within AO353_14445at 3203.607 kb on + strand, within AO353_14445at 3203.607 kb on + strand, within AO353_14445at 3203.607 kb on + strand, within AO353_14445at 3203.607 kb on + strand, within AO353_14445at 3203.607 kb on + strand, within AO353_14445at 3203.607 kb on + strand, within AO353_14445at 3203.608 kb on - strand, within AO353_14445at 3203.608 kb on - strand, within AO353_14445

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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3,201,136 + AO353_14430 0.36 +0.4
3,201,136 + AO353_14430 0.36 +0.4
3,201,136 + AO353_14430 0.36 +0.3
3,201,136 + AO353_14430 0.36 -1.2
3,201,136 + AO353_14430 0.36 -0.5
3,201,137 - AO353_14430 0.36 +0.1
3,201,137 - AO353_14430 0.36 -1.0
3,201,137 - AO353_14430 0.36 -0.6
3,201,137 - AO353_14430 0.36 -0.8
3,201,156 + AO353_14430 0.39 -0.1
3,201,156 + AO353_14430 0.39 -0.5
3,201,157 - AO353_14430 0.39 +1.0
3,201,157 - AO353_14430 0.39 -0.3
3,201,157 - AO353_14430 0.39 +0.4
3,201,395 - AO353_14430 0.72 -0.2
3,201,395 - AO353_14430 0.72 +0.1
3,201,413 + AO353_14430 0.75 +0.7
3,201,413 + AO353_14430 0.75 -1.2
3,201,413 + AO353_14430 0.75 -1.3
3,201,413 + AO353_14430 0.75 +0.2
3,201,414 - AO353_14430 0.75 -0.3
3,201,414 - AO353_14430 0.75 -0.9
3,201,414 - AO353_14430 0.75 -0.4
3,201,414 - AO353_14430 0.75 +1.0
3,201,524 + -0.3
3,201,524 + +0.6
3,201,552 + +0.3
3,201,552 + -0.4
3,201,552 + -0.6
3,201,552 + +0.6
3,201,552 + -0.7
3,201,553 - +0.7
3,201,553 - +0.5
3,201,553 - +0.5
3,201,553 - +0.1
3,201,553 - +0.2
3,201,596 + +0.0
3,201,596 + +1.0
3,201,607 - -1.0
3,201,607 - +0.1
3,201,813 + AO353_14435 0.65 -1.2
3,201,813 + AO353_14435 0.65 +0.7
3,201,819 + AO353_14435 0.67 -0.3
3,201,819 + AO353_14435 0.67 +0.5
3,201,820 - AO353_14435 0.68 +0.1
3,201,820 - AO353_14435 0.68 -1.0
3,201,820 - AO353_14435 0.68 -0.4
3,201,820 - AO353_14435 0.68 +0.8
3,201,820 - AO353_14435 0.68 +0.6
3,201,820 - AO353_14435 0.68 -0.9
3,201,820 - AO353_14435 0.68 -0.3
3,201,820 - AO353_14435 0.68 -0.1
3,201,839 + AO353_14435 0.74 +0.3
3,201,926 + -1.0
3,201,927 - +0.0
3,201,927 - +0.2
3,202,056 + -0.0
3,202,107 + -0.4
3,202,107 + +0.1
3,202,119 + -0.2
3,202,120 - -1.2
3,202,128 + +0.2
3,202,129 - +0.6
3,202,129 - -1.4
3,202,495 - AO353_14440 0.44 +0.0
3,202,495 - AO353_14440 0.44 -0.6
3,202,540 + AO353_14440 0.49 -0.5
3,202,540 + AO353_14440 0.49 +1.6
3,202,540 + AO353_14440 0.49 -2.4
3,202,540 + AO353_14440 0.49 -0.8
3,202,541 - AO353_14440 0.49 -1.3
3,202,541 - AO353_14440 0.49 -0.9
3,202,541 - AO353_14440 0.49 -0.1
3,202,701 + AO353_14440 0.67 -1.1
3,202,701 + AO353_14440 0.67 -0.3
3,202,701 + AO353_14440 0.67 -0.7
3,202,716 + AO353_14440 0.68 -0.4
3,202,890 + AO353_14440 0.88 -0.3
3,202,890 + AO353_14440 0.88 -0.2
3,202,891 - AO353_14440 0.88 +0.8
3,202,891 - AO353_14440 0.88 +0.0
3,202,937 + +0.1
3,202,937 + +0.1
3,202,938 - -0.9
3,202,957 + -0.8
3,202,957 + +0.2
3,202,957 + -0.7
3,202,958 - +0.7
3,202,958 - -0.9
3,202,997 + +0.1
3,202,997 + -1.0
3,202,997 + -1.0
3,202,997 + -0.5
3,202,998 - +0.2
3,202,998 - +1.3
3,202,998 - +0.5
3,202,998 - -1.5
3,203,102 + AO353_14445 0.11 -0.1
3,203,103 - AO353_14445 0.11 -1.0
3,203,198 + AO353_14445 0.20 +0.7
3,203,198 + AO353_14445 0.20 +0.2
3,203,199 - AO353_14445 0.20 +0.4
3,203,382 + AO353_14445 0.38 +0.1
3,203,382 + AO353_14445 0.38 +1.6
3,203,382 + AO353_14445 0.38 +0.5
3,203,382 + AO353_14445 0.38 -0.0
3,203,383 - AO353_14445 0.38 +0.1
3,203,383 - AO353_14445 0.38 +0.5
3,203,538 + AO353_14445 0.53 +1.0
3,203,538 + AO353_14445 0.53 +0.4
3,203,538 + AO353_14445 0.53 -0.5
3,203,538 + AO353_14445 0.53 -1.5
3,203,539 - AO353_14445 0.53 -0.5
3,203,539 - AO353_14445 0.53 +0.8
3,203,539 - AO353_14445 0.53 -1.7
3,203,539 - AO353_14445 0.53 -0.0
3,203,564 + AO353_14445 0.55 +0.1
3,203,564 + AO353_14445 0.55 -0.3
3,203,565 - AO353_14445 0.55 +0.2
3,203,607 + AO353_14445 0.59 +0.8
3,203,607 + AO353_14445 0.59 +0.5
3,203,607 + AO353_14445 0.59 -0.3
3,203,607 + AO353_14445 0.59 +0.3
3,203,607 + AO353_14445 0.59 -0.7
3,203,607 + AO353_14445 0.59 +1.6
3,203,607 + AO353_14445 0.59 -0.4
3,203,607 + AO353_14445 0.59 +1.3
3,203,607 + AO353_14445 0.59 -1.3
3,203,608 - AO353_14445 0.59 -0.8
3,203,608 - AO353_14445 0.59 +1.5

Or see this region's nucleotide sequence