Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2164

Experiment: MoYLS4 with Fusidic 0.015625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2163 and DvMF_2164 are separated by 24 nucleotidesDvMF_2164 and DvMF_2165 are separated by 368 nucleotides DvMF_2163: DvMF_2163 - transporter, hydrophobe/amphiphile efflux-1 (HAE1) family (RefSeq), at 2,696,715 to 2,699,951 _2163 DvMF_2164: DvMF_2164 - efflux transporter, RND family, MFP subunit (RefSeq), at 2,699,976 to 2,701,193 _2164 DvMF_2165: DvMF_2165 - transcriptional regulator, TetR family (RefSeq), at 2,701,562 to 2,702,353 _2165 Position (kb) 2699 2700 2701 2702Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2699.168 kb on + strand, within DvMF_2163at 2699.234 kb on + strand, within DvMF_2163at 2699.398 kb on + strand, within DvMF_2163at 2699.424 kb on + strand, within DvMF_2163at 2699.595 kb on - strand, within DvMF_2163at 2699.807 kb on - strandat 2699.907 kb on - strandat 2700.042 kb on + strandat 2700.102 kb on + strand, within DvMF_2164at 2700.224 kb on + strand, within DvMF_2164at 2700.224 kb on + strand, within DvMF_2164at 2700.232 kb on - strand, within DvMF_2164at 2700.255 kb on + strand, within DvMF_2164at 2700.262 kb on + strand, within DvMF_2164at 2700.340 kb on + strand, within DvMF_2164at 2700.410 kb on + strand, within DvMF_2164at 2700.430 kb on - strand, within DvMF_2164at 2700.519 kb on - strand, within DvMF_2164at 2700.596 kb on - strand, within DvMF_2164at 2700.800 kb on - strand, within DvMF_2164at 2700.893 kb on + strand, within DvMF_2164at 2700.901 kb on - strand, within DvMF_2164at 2700.901 kb on - strand, within DvMF_2164at 2700.997 kb on - strand, within DvMF_2164at 2701.004 kb on + strand, within DvMF_2164at 2701.041 kb on - strand, within DvMF_2164at 2701.090 kb on + strandat 2701.150 kb on + strandat 2701.185 kb on - strandat 2701.201 kb on + strandat 2701.268 kb on - strandat 2701.308 kb on + strandat 2701.365 kb on - strandat 2701.490 kb on - strandat 2701.559 kb on + strandat 2701.635 kb on - strandat 2701.644 kb on - strand, within DvMF_2165at 2701.954 kb on + strand, within DvMF_2165at 2701.981 kb on + strand, within DvMF_2165

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Fusidic 0.015625 mg/ml
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2,699,168 + DvMF_2163 0.76 -4.1
2,699,234 + DvMF_2163 0.78 -4.2
2,699,398 + DvMF_2163 0.83 -5.0
2,699,424 + DvMF_2163 0.84 -4.4
2,699,595 - DvMF_2163 0.89 -4.2
2,699,807 - -5.7
2,699,907 - -3.5
2,700,042 + -0.7
2,700,102 + DvMF_2164 0.10 -5.0
2,700,224 + DvMF_2164 0.20 -4.5
2,700,224 + DvMF_2164 0.20 -3.8
2,700,232 - DvMF_2164 0.21 -3.3
2,700,255 + DvMF_2164 0.23 -4.1
2,700,262 + DvMF_2164 0.23 -3.9
2,700,340 + DvMF_2164 0.30 -4.7
2,700,410 + DvMF_2164 0.36 -4.5
2,700,430 - DvMF_2164 0.37 -5.8
2,700,519 - DvMF_2164 0.45 -3.5
2,700,596 - DvMF_2164 0.51 -4.1
2,700,800 - DvMF_2164 0.68 -5.0
2,700,893 + DvMF_2164 0.75 -4.6
2,700,901 - DvMF_2164 0.76 -5.0
2,700,901 - DvMF_2164 0.76 -6.1
2,700,997 - DvMF_2164 0.84 -3.5
2,701,004 + DvMF_2164 0.84 -3.5
2,701,041 - DvMF_2164 0.87 -2.6
2,701,090 + -3.5
2,701,150 + -2.4
2,701,185 - -4.7
2,701,201 + -4.3
2,701,268 - -1.5
2,701,308 + -1.4
2,701,365 - -0.6
2,701,490 - -0.1
2,701,559 + -0.2
2,701,635 - -0.2
2,701,644 - DvMF_2165 0.10 +0.3
2,701,954 + DvMF_2165 0.49 +0.7
2,701,981 + DvMF_2165 0.53 +0.3

Or see this region's nucleotide sequence