Experiment: MoYLS4 with Fusidic 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2138 and DvMF_2139 are separated by 190 nucleotides DvMF_2139 and DvMF_2140 are separated by 303 nucleotides DvMF_2140 and DvMF_2141 are separated by 78 nucleotides
DvMF_2138: DvMF_2138 - transcriptional regulator, LysR family (RefSeq), at 2,662,566 to 2,663,579
_2138
DvMF_2139: DvMF_2139 - hypothetical protein (RefSeq), at 2,663,770 to 2,663,901
_2139
DvMF_2140: DvMF_2140 - NAD(P)H dehydrogenase (quinone) (RefSeq), at 2,664,205 to 2,664,789
_2140
DvMF_2141: DvMF_2141 - peptidase U32 (RefSeq), at 2,664,868 to 2,666,997
_2141
Position (kb)
2663
2664 Strain fitness (log2 ratio)
-1
0
1 at 2663.388 kb on - strand, within DvMF_2138 at 2663.409 kb on + strand, within DvMF_2138 at 2663.417 kb on - strand, within DvMF_2138 at 2663.714 kb on + strand at 2663.731 kb on - strand at 2663.828 kb on + strand, within DvMF_2139 at 2663.877 kb on - strand, within DvMF_2139 at 2663.900 kb on - strand at 2664.228 kb on + strand at 2664.300 kb on - strand, within DvMF_2140 at 2664.347 kb on - strand, within DvMF_2140 at 2664.386 kb on + strand, within DvMF_2140 at 2664.491 kb on - strand, within DvMF_2140 at 2664.610 kb on + strand, within DvMF_2140 at 2664.764 kb on - strand at 2664.790 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Fusidic 0.015625 mg/ml remove 2,663,388 - DvMF_2138 0.81 +0.0 2,663,409 + DvMF_2138 0.83 -0.5 2,663,417 - DvMF_2138 0.84 -0.7 2,663,714 + -0.4 2,663,731 - -0.3 2,663,828 + DvMF_2139 0.44 -0.8 2,663,877 - DvMF_2139 0.81 -1.5 2,663,900 - -0.4 2,664,228 + +0.0 2,664,300 - DvMF_2140 0.16 -0.1 2,664,347 - DvMF_2140 0.24 -0.3 2,664,386 + DvMF_2140 0.31 -0.2 2,664,491 - DvMF_2140 0.49 -0.3 2,664,610 + DvMF_2140 0.69 -0.2 2,664,764 - -0.6 2,664,790 + -0.1
Or see this region's nucleotide sequence