Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0807

Experiment: MoYLS4 with Fusidic 0.015625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0806 and DvMF_0807 are separated by 267 nucleotidesDvMF_0807 and DvMF_0808 are separated by 221 nucleotides DvMF_0806: DvMF_0806 - transcriptional regulator, AraC family (RefSeq), at 971,543 to 972,610 _0806 DvMF_0807: DvMF_0807 - Bile acid:sodium symporter (RefSeq), at 972,878 to 973,951 _0807 DvMF_0808: DvMF_0808 - transcriptional regulator, AraC family (RefSeq), at 974,173 to 974,967 _0808 Position (kb) 972 973 974Strain fitness (log2 ratio) -1 0 1at 971.943 kb on - strand, within DvMF_0806at 972.027 kb on + strand, within DvMF_0806at 972.153 kb on - strand, within DvMF_0806at 972.346 kb on + strand, within DvMF_0806at 972.507 kb on - strandat 972.825 kb on - strandat 973.539 kb on - strand, within DvMF_0807at 973.602 kb on + strand, within DvMF_0807at 973.621 kb on + strand, within DvMF_0807at 973.942 kb on + strandat 974.029 kb on - strandat 974.093 kb on - strandat 974.211 kb on + strandat 974.428 kb on + strand, within DvMF_0808at 974.446 kb on + strand, within DvMF_0808at 974.557 kb on - strand, within DvMF_0808at 974.675 kb on - strand, within DvMF_0808at 974.739 kb on - strand, within DvMF_0808at 974.779 kb on - strand, within DvMF_0808at 974.951 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Fusidic 0.015625 mg/ml
remove
971,943 - DvMF_0806 0.37 -0.5
972,027 + DvMF_0806 0.45 -0.4
972,153 - DvMF_0806 0.57 -0.1
972,346 + DvMF_0806 0.75 -0.5
972,507 - -0.3
972,825 - -0.0
973,539 - DvMF_0807 0.62 -0.0
973,602 + DvMF_0807 0.67 -0.9
973,621 + DvMF_0807 0.69 -1.6
973,942 + -0.7
974,029 - +0.2
974,093 - -0.2
974,211 + -0.2
974,428 + DvMF_0808 0.32 -0.5
974,446 + DvMF_0808 0.34 -0.2
974,557 - DvMF_0808 0.48 -0.4
974,675 - DvMF_0808 0.63 -0.7
974,739 - DvMF_0808 0.71 -0.3
974,779 - DvMF_0808 0.76 -0.3
974,951 - -0.0

Or see this region's nucleotide sequence