Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_R0009

Experiment: MoYLS4 with Fusidic 0.015625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0168 and DvMF_R0009 are separated by 109 nucleotidesDvMF_R0009 and DvMF_0169 are separated by 90 nucleotidesDvMF_0169 and DvMF_0170 are separated by 377 nucleotides DvMF_0168: DvMF_0168 - hypothetical protein (RefSeq), at 184,541 to 185,011 _0168 DvMF_R0009: DvMF_R0009 - tRNA-Ser (RefSeq), at 185,121 to 185,214 _R0009 DvMF_0169: DvMF_0169 - CMP/dCMP deaminase zinc-binding (RefSeq), at 185,305 to 185,832 _0169 DvMF_0170: DvMF_0170 - hypothetical protein (RefSeq), at 186,210 to 186,866 _0170 Position (kb) 185 186Strain fitness (log2 ratio) -1 0 1at 184.221 kb on + strandat 184.221 kb on + strandat 184.290 kb on - strandat 184.351 kb on + strandat 184.351 kb on + strandat 184.351 kb on + strandat 184.373 kb on - strandat 184.542 kb on - strandat 184.695 kb on + strand, within DvMF_0168at 184.857 kb on + strand, within DvMF_0168at 184.862 kb on + strand, within DvMF_0168

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Fusidic 0.015625 mg/ml
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184,221 + -0.3
184,221 + -0.3
184,290 - +0.2
184,351 + +0.1
184,351 + -0.4
184,351 + -0.3
184,373 - -0.2
184,542 - -0.5
184,695 + DvMF_0168 0.33 -0.0
184,857 + DvMF_0168 0.67 +0.3
184,862 + DvMF_0168 0.68 -0.7

Or see this region's nucleotide sequence