Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_834

Experiment: Rifampicin 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_833 and Pf6N2E2_834 overlap by 4 nucleotidesPf6N2E2_834 and Pf6N2E2_835 are separated by 56 nucleotides Pf6N2E2_833 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 972,059 to 973,003 _833 Pf6N2E2_834 - Cation efflux system protein, at 973,000 to 976,080 _834 Pf6N2E2_835 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 976,137 to 977,429 _835 Position (kb) 972 973 974 975 976 977Strain fitness (log2 ratio) -2 -1 0 1 2at 972.399 kb on - strand, within Pf6N2E2_833at 972.649 kb on + strand, within Pf6N2E2_833at 972.650 kb on - strand, within Pf6N2E2_833at 972.665 kb on + strand, within Pf6N2E2_833at 972.666 kb on - strand, within Pf6N2E2_833at 972.776 kb on + strand, within Pf6N2E2_833at 973.049 kb on + strandat 973.050 kb on - strandat 973.050 kb on - strandat 973.150 kb on - strandat 973.234 kb on + strandat 973.252 kb on + strandat 973.252 kb on + strandat 973.252 kb on + strandat 973.253 kb on - strandat 973.253 kb on - strandat 973.253 kb on - strandat 973.330 kb on + strand, within Pf6N2E2_834at 973.331 kb on - strand, within Pf6N2E2_834at 973.331 kb on - strand, within Pf6N2E2_834at 973.331 kb on - strand, within Pf6N2E2_834at 973.409 kb on - strand, within Pf6N2E2_834at 973.643 kb on + strand, within Pf6N2E2_834at 973.644 kb on - strand, within Pf6N2E2_834at 974.075 kb on + strand, within Pf6N2E2_834at 974.075 kb on + strand, within Pf6N2E2_834at 974.278 kb on + strand, within Pf6N2E2_834at 974.278 kb on + strand, within Pf6N2E2_834at 974.279 kb on - strand, within Pf6N2E2_834at 974.377 kb on + strand, within Pf6N2E2_834at 974.377 kb on + strand, within Pf6N2E2_834at 974.429 kb on + strand, within Pf6N2E2_834at 974.430 kb on - strand, within Pf6N2E2_834at 974.439 kb on - strand, within Pf6N2E2_834at 974.445 kb on + strand, within Pf6N2E2_834at 974.446 kb on - strand, within Pf6N2E2_834at 974.513 kb on - strand, within Pf6N2E2_834at 974.527 kb on + strand, within Pf6N2E2_834at 974.980 kb on + strand, within Pf6N2E2_834at 975.054 kb on - strand, within Pf6N2E2_834at 975.312 kb on + strand, within Pf6N2E2_834at 975.312 kb on + strand, within Pf6N2E2_834at 975.313 kb on - strand, within Pf6N2E2_834at 975.371 kb on + strand, within Pf6N2E2_834at 975.371 kb on + strand, within Pf6N2E2_834at 975.371 kb on + strand, within Pf6N2E2_834at 975.371 kb on + strand, within Pf6N2E2_834at 975.371 kb on + strand, within Pf6N2E2_834at 975.371 kb on + strand, within Pf6N2E2_834at 975.371 kb on + strand, within Pf6N2E2_834at 975.371 kb on + strand, within Pf6N2E2_834at 975.371 kb on + strand, within Pf6N2E2_834at 975.371 kb on + strand, within Pf6N2E2_834at 975.371 kb on + strand, within Pf6N2E2_834at 975.371 kb on + strand, within Pf6N2E2_834at 975.372 kb on - strand, within Pf6N2E2_834at 975.372 kb on - strand, within Pf6N2E2_834at 975.372 kb on - strand, within Pf6N2E2_834at 975.372 kb on - strand, within Pf6N2E2_834at 975.372 kb on - strand, within Pf6N2E2_834at 975.372 kb on - strand, within Pf6N2E2_834at 975.372 kb on - strand, within Pf6N2E2_834at 975.372 kb on - strand, within Pf6N2E2_834at 975.372 kb on - strand, within Pf6N2E2_834at 975.372 kb on - strand, within Pf6N2E2_834at 975.409 kb on - strand, within Pf6N2E2_834at 975.464 kb on + strand, within Pf6N2E2_834at 975.465 kb on - strand, within Pf6N2E2_834at 975.465 kb on - strand, within Pf6N2E2_834at 975.710 kb on + strand, within Pf6N2E2_834at 975.711 kb on - strand, within Pf6N2E2_834at 975.860 kb on + strandat 975.861 kb on - strandat 975.861 kb on - strandat 976.015 kb on + strandat 976.015 kb on + strandat 976.015 kb on + strandat 976.015 kb on + strandat 976.016 kb on - strandat 976.067 kb on + strandat 976.068 kb on - strandat 976.077 kb on - strandat 976.079 kb on - strandat 976.136 kb on + strandat 976.136 kb on + strandat 976.136 kb on + strandat 976.136 kb on + strandat 976.136 kb on + strandat 976.136 kb on + strandat 976.136 kb on + strandat 976.136 kb on + strandat 976.136 kb on + strandat 976.136 kb on + strandat 976.137 kb on - strandat 976.137 kb on - strandat 976.210 kb on + strandat 976.219 kb on + strandat 976.219 kb on + strandat 976.220 kb on - strandat 976.256 kb on + strandat 976.256 kb on + strandat 976.256 kb on + strandat 976.256 kb on + strandat 976.733 kb on + strand, within Pf6N2E2_835at 976.733 kb on + strand, within Pf6N2E2_835at 976.733 kb on + strand, within Pf6N2E2_835at 976.733 kb on + strand, within Pf6N2E2_835at 976.733 kb on + strand, within Pf6N2E2_835at 976.734 kb on - strand, within Pf6N2E2_835at 976.734 kb on - strand, within Pf6N2E2_835at 977.078 kb on + strand, within Pf6N2E2_835at 977.079 kb on - strand, within Pf6N2E2_835

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.003 mg/ml
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972,399 - Pf6N2E2_833 0.36 -0.4
972,649 + Pf6N2E2_833 0.62 -0.7
972,650 - Pf6N2E2_833 0.63 +1.5
972,665 + Pf6N2E2_833 0.64 -1.7
972,666 - Pf6N2E2_833 0.64 +0.3
972,776 + Pf6N2E2_833 0.76 +0.2
973,049 + -0.9
973,050 - -2.0
973,050 - -0.5
973,150 - -1.0
973,234 + +0.2
973,252 + -1.1
973,252 + -1.3
973,252 + -1.7
973,253 - +0.5
973,253 - -0.6
973,253 - +0.5
973,330 + Pf6N2E2_834 0.11 +1.1
973,331 - Pf6N2E2_834 0.11 -0.4
973,331 - Pf6N2E2_834 0.11 +1.1
973,331 - Pf6N2E2_834 0.11 -2.6
973,409 - Pf6N2E2_834 0.13 -1.1
973,643 + Pf6N2E2_834 0.21 +0.0
973,644 - Pf6N2E2_834 0.21 -1.8
974,075 + Pf6N2E2_834 0.35 +0.7
974,075 + Pf6N2E2_834 0.35 +0.2
974,278 + Pf6N2E2_834 0.41 -0.3
974,278 + Pf6N2E2_834 0.41 +0.5
974,279 - Pf6N2E2_834 0.42 -1.0
974,377 + Pf6N2E2_834 0.45 +0.4
974,377 + Pf6N2E2_834 0.45 -0.6
974,429 + Pf6N2E2_834 0.46 +1.4
974,430 - Pf6N2E2_834 0.46 +0.7
974,439 - Pf6N2E2_834 0.47 -0.6
974,445 + Pf6N2E2_834 0.47 +1.0
974,446 - Pf6N2E2_834 0.47 +0.4
974,513 - Pf6N2E2_834 0.49 -0.1
974,527 + Pf6N2E2_834 0.50 -0.5
974,980 + Pf6N2E2_834 0.64 +0.2
975,054 - Pf6N2E2_834 0.67 -0.6
975,312 + Pf6N2E2_834 0.75 -0.4
975,312 + Pf6N2E2_834 0.75 -1.6
975,313 - Pf6N2E2_834 0.75 -0.1
975,371 + Pf6N2E2_834 0.77 -0.6
975,371 + Pf6N2E2_834 0.77 -0.5
975,371 + Pf6N2E2_834 0.77 -0.1
975,371 + Pf6N2E2_834 0.77 +0.2
975,371 + Pf6N2E2_834 0.77 +0.1
975,371 + Pf6N2E2_834 0.77 -1.2
975,371 + Pf6N2E2_834 0.77 -0.1
975,371 + Pf6N2E2_834 0.77 -0.5
975,371 + Pf6N2E2_834 0.77 -0.0
975,371 + Pf6N2E2_834 0.77 -0.5
975,371 + Pf6N2E2_834 0.77 +0.4
975,371 + Pf6N2E2_834 0.77 -0.8
975,372 - Pf6N2E2_834 0.77 -0.7
975,372 - Pf6N2E2_834 0.77 -1.8
975,372 - Pf6N2E2_834 0.77 +1.8
975,372 - Pf6N2E2_834 0.77 -1.4
975,372 - Pf6N2E2_834 0.77 -1.6
975,372 - Pf6N2E2_834 0.77 +0.5
975,372 - Pf6N2E2_834 0.77 +0.2
975,372 - Pf6N2E2_834 0.77 -0.4
975,372 - Pf6N2E2_834 0.77 -0.5
975,372 - Pf6N2E2_834 0.77 -0.2
975,409 - Pf6N2E2_834 0.78 -1.7
975,464 + Pf6N2E2_834 0.80 -0.0
975,465 - Pf6N2E2_834 0.80 -0.6
975,465 - Pf6N2E2_834 0.80 -1.2
975,710 + Pf6N2E2_834 0.88 +0.3
975,711 - Pf6N2E2_834 0.88 -0.5
975,860 + -0.4
975,861 - +0.2
975,861 - +0.4
976,015 + -0.5
976,015 + -0.3
976,015 + +0.3
976,015 + -0.3
976,016 - -0.3
976,067 + +0.2
976,068 - -0.6
976,077 - +0.9
976,079 - -0.6
976,136 + +0.8
976,136 + -0.1
976,136 + -0.4
976,136 + -0.3
976,136 + +0.5
976,136 + -1.1
976,136 + -1.1
976,136 + +0.2
976,136 + -0.1
976,136 + -0.8
976,137 - +0.9
976,137 - -0.4
976,210 + -2.3
976,219 + +0.1
976,219 + -1.1
976,220 - +0.2
976,256 + +0.4
976,256 + -0.6
976,256 + -0.4
976,256 + -1.0
976,733 + Pf6N2E2_835 0.46 -0.2
976,733 + Pf6N2E2_835 0.46 -0.0
976,733 + Pf6N2E2_835 0.46 +0.7
976,733 + Pf6N2E2_835 0.46 -0.6
976,733 + Pf6N2E2_835 0.46 -2.2
976,734 - Pf6N2E2_835 0.46 -1.3
976,734 - Pf6N2E2_835 0.46 -0.5
977,078 + Pf6N2E2_835 0.73 -0.6
977,079 - Pf6N2E2_835 0.73 +0.6

Or see this region's nucleotide sequence