Experiment: Rifampicin 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_833 and Pf6N2E2_834 overlap by 4 nucleotides Pf6N2E2_834 and Pf6N2E2_835 are separated by 56 nucleotides
Pf6N2E2_833 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 972,059 to 973,003
_833
Pf6N2E2_834 - Cation efflux system protein, at 973,000 to 976,080
_834
Pf6N2E2_835 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 976,137 to 977,429
_835
Position (kb)
972
973
974
975
976
977 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 972.399 kb on - strand, within Pf6N2E2_833 at 972.649 kb on + strand, within Pf6N2E2_833 at 972.650 kb on - strand, within Pf6N2E2_833 at 972.665 kb on + strand, within Pf6N2E2_833 at 972.666 kb on - strand, within Pf6N2E2_833 at 972.776 kb on + strand, within Pf6N2E2_833 at 973.049 kb on + strand at 973.050 kb on - strand at 973.050 kb on - strand at 973.150 kb on - strand at 973.234 kb on + strand at 973.252 kb on + strand at 973.252 kb on + strand at 973.252 kb on + strand at 973.253 kb on - strand at 973.253 kb on - strand at 973.253 kb on - strand at 973.330 kb on + strand, within Pf6N2E2_834 at 973.331 kb on - strand, within Pf6N2E2_834 at 973.331 kb on - strand, within Pf6N2E2_834 at 973.331 kb on - strand, within Pf6N2E2_834 at 973.409 kb on - strand, within Pf6N2E2_834 at 973.643 kb on + strand, within Pf6N2E2_834 at 973.644 kb on - strand, within Pf6N2E2_834 at 974.075 kb on + strand, within Pf6N2E2_834 at 974.075 kb on + strand, within Pf6N2E2_834 at 974.278 kb on + strand, within Pf6N2E2_834 at 974.278 kb on + strand, within Pf6N2E2_834 at 974.279 kb on - strand, within Pf6N2E2_834 at 974.377 kb on + strand, within Pf6N2E2_834 at 974.377 kb on + strand, within Pf6N2E2_834 at 974.429 kb on + strand, within Pf6N2E2_834 at 974.430 kb on - strand, within Pf6N2E2_834 at 974.439 kb on - strand, within Pf6N2E2_834 at 974.445 kb on + strand, within Pf6N2E2_834 at 974.446 kb on - strand, within Pf6N2E2_834 at 974.513 kb on - strand, within Pf6N2E2_834 at 974.527 kb on + strand, within Pf6N2E2_834 at 974.980 kb on + strand, within Pf6N2E2_834 at 975.054 kb on - strand, within Pf6N2E2_834 at 975.312 kb on + strand, within Pf6N2E2_834 at 975.312 kb on + strand, within Pf6N2E2_834 at 975.313 kb on - strand, within Pf6N2E2_834 at 975.371 kb on + strand, within Pf6N2E2_834 at 975.371 kb on + strand, within Pf6N2E2_834 at 975.371 kb on + strand, within Pf6N2E2_834 at 975.371 kb on + strand, within Pf6N2E2_834 at 975.371 kb on + strand, within Pf6N2E2_834 at 975.371 kb on + strand, within Pf6N2E2_834 at 975.371 kb on + strand, within Pf6N2E2_834 at 975.371 kb on + strand, within Pf6N2E2_834 at 975.371 kb on + strand, within Pf6N2E2_834 at 975.371 kb on + strand, within Pf6N2E2_834 at 975.371 kb on + strand, within Pf6N2E2_834 at 975.371 kb on + strand, within Pf6N2E2_834 at 975.372 kb on - strand, within Pf6N2E2_834 at 975.372 kb on - strand, within Pf6N2E2_834 at 975.372 kb on - strand, within Pf6N2E2_834 at 975.372 kb on - strand, within Pf6N2E2_834 at 975.372 kb on - strand, within Pf6N2E2_834 at 975.372 kb on - strand, within Pf6N2E2_834 at 975.372 kb on - strand, within Pf6N2E2_834 at 975.372 kb on - strand, within Pf6N2E2_834 at 975.372 kb on - strand, within Pf6N2E2_834 at 975.372 kb on - strand, within Pf6N2E2_834 at 975.409 kb on - strand, within Pf6N2E2_834 at 975.464 kb on + strand, within Pf6N2E2_834 at 975.465 kb on - strand, within Pf6N2E2_834 at 975.465 kb on - strand, within Pf6N2E2_834 at 975.710 kb on + strand, within Pf6N2E2_834 at 975.711 kb on - strand, within Pf6N2E2_834 at 975.860 kb on + strand at 975.861 kb on - strand at 975.861 kb on - strand at 976.015 kb on + strand at 976.015 kb on + strand at 976.015 kb on + strand at 976.015 kb on + strand at 976.016 kb on - strand at 976.067 kb on + strand at 976.068 kb on - strand at 976.077 kb on - strand at 976.079 kb on - strand at 976.136 kb on + strand at 976.136 kb on + strand at 976.136 kb on + strand at 976.136 kb on + strand at 976.136 kb on + strand at 976.136 kb on + strand at 976.136 kb on + strand at 976.136 kb on + strand at 976.136 kb on + strand at 976.136 kb on + strand at 976.137 kb on - strand at 976.137 kb on - strand at 976.210 kb on + strand at 976.219 kb on + strand at 976.219 kb on + strand at 976.220 kb on - strand at 976.256 kb on + strand at 976.256 kb on + strand at 976.256 kb on + strand at 976.256 kb on + strand at 976.733 kb on + strand, within Pf6N2E2_835 at 976.733 kb on + strand, within Pf6N2E2_835 at 976.733 kb on + strand, within Pf6N2E2_835 at 976.733 kb on + strand, within Pf6N2E2_835 at 976.733 kb on + strand, within Pf6N2E2_835 at 976.734 kb on - strand, within Pf6N2E2_835 at 976.734 kb on - strand, within Pf6N2E2_835 at 977.078 kb on + strand, within Pf6N2E2_835 at 977.079 kb on - strand, within Pf6N2E2_835
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.003 mg/ml remove 972,399 - Pf6N2E2_833 0.36 -0.4 972,649 + Pf6N2E2_833 0.62 -0.7 972,650 - Pf6N2E2_833 0.63 +1.5 972,665 + Pf6N2E2_833 0.64 -1.7 972,666 - Pf6N2E2_833 0.64 +0.3 972,776 + Pf6N2E2_833 0.76 +0.2 973,049 + -0.9 973,050 - -2.0 973,050 - -0.5 973,150 - -1.0 973,234 + +0.2 973,252 + -1.1 973,252 + -1.3 973,252 + -1.7 973,253 - +0.5 973,253 - -0.6 973,253 - +0.5 973,330 + Pf6N2E2_834 0.11 +1.1 973,331 - Pf6N2E2_834 0.11 -0.4 973,331 - Pf6N2E2_834 0.11 +1.1 973,331 - Pf6N2E2_834 0.11 -2.6 973,409 - Pf6N2E2_834 0.13 -1.1 973,643 + Pf6N2E2_834 0.21 +0.0 973,644 - Pf6N2E2_834 0.21 -1.8 974,075 + Pf6N2E2_834 0.35 +0.7 974,075 + Pf6N2E2_834 0.35 +0.2 974,278 + Pf6N2E2_834 0.41 -0.3 974,278 + Pf6N2E2_834 0.41 +0.5 974,279 - Pf6N2E2_834 0.42 -1.0 974,377 + Pf6N2E2_834 0.45 +0.4 974,377 + Pf6N2E2_834 0.45 -0.6 974,429 + Pf6N2E2_834 0.46 +1.4 974,430 - Pf6N2E2_834 0.46 +0.7 974,439 - Pf6N2E2_834 0.47 -0.6 974,445 + Pf6N2E2_834 0.47 +1.0 974,446 - Pf6N2E2_834 0.47 +0.4 974,513 - Pf6N2E2_834 0.49 -0.1 974,527 + Pf6N2E2_834 0.50 -0.5 974,980 + Pf6N2E2_834 0.64 +0.2 975,054 - Pf6N2E2_834 0.67 -0.6 975,312 + Pf6N2E2_834 0.75 -0.4 975,312 + Pf6N2E2_834 0.75 -1.6 975,313 - Pf6N2E2_834 0.75 -0.1 975,371 + Pf6N2E2_834 0.77 -0.6 975,371 + Pf6N2E2_834 0.77 -0.5 975,371 + Pf6N2E2_834 0.77 -0.1 975,371 + Pf6N2E2_834 0.77 +0.2 975,371 + Pf6N2E2_834 0.77 +0.1 975,371 + Pf6N2E2_834 0.77 -1.2 975,371 + Pf6N2E2_834 0.77 -0.1 975,371 + Pf6N2E2_834 0.77 -0.5 975,371 + Pf6N2E2_834 0.77 -0.0 975,371 + Pf6N2E2_834 0.77 -0.5 975,371 + Pf6N2E2_834 0.77 +0.4 975,371 + Pf6N2E2_834 0.77 -0.8 975,372 - Pf6N2E2_834 0.77 -0.7 975,372 - Pf6N2E2_834 0.77 -1.8 975,372 - Pf6N2E2_834 0.77 +1.8 975,372 - Pf6N2E2_834 0.77 -1.4 975,372 - Pf6N2E2_834 0.77 -1.6 975,372 - Pf6N2E2_834 0.77 +0.5 975,372 - Pf6N2E2_834 0.77 +0.2 975,372 - Pf6N2E2_834 0.77 -0.4 975,372 - Pf6N2E2_834 0.77 -0.5 975,372 - Pf6N2E2_834 0.77 -0.2 975,409 - Pf6N2E2_834 0.78 -1.7 975,464 + Pf6N2E2_834 0.80 -0.0 975,465 - Pf6N2E2_834 0.80 -0.6 975,465 - Pf6N2E2_834 0.80 -1.2 975,710 + Pf6N2E2_834 0.88 +0.3 975,711 - Pf6N2E2_834 0.88 -0.5 975,860 + -0.4 975,861 - +0.2 975,861 - +0.4 976,015 + -0.5 976,015 + -0.3 976,015 + +0.3 976,015 + -0.3 976,016 - -0.3 976,067 + +0.2 976,068 - -0.6 976,077 - +0.9 976,079 - -0.6 976,136 + +0.8 976,136 + -0.1 976,136 + -0.4 976,136 + -0.3 976,136 + +0.5 976,136 + -1.1 976,136 + -1.1 976,136 + +0.2 976,136 + -0.1 976,136 + -0.8 976,137 - +0.9 976,137 - -0.4 976,210 + -2.3 976,219 + +0.1 976,219 + -1.1 976,220 - +0.2 976,256 + +0.4 976,256 + -0.6 976,256 + -0.4 976,256 + -1.0 976,733 + Pf6N2E2_835 0.46 -0.2 976,733 + Pf6N2E2_835 0.46 -0.0 976,733 + Pf6N2E2_835 0.46 +0.7 976,733 + Pf6N2E2_835 0.46 -0.6 976,733 + Pf6N2E2_835 0.46 -2.2 976,734 - Pf6N2E2_835 0.46 -1.3 976,734 - Pf6N2E2_835 0.46 -0.5 977,078 + Pf6N2E2_835 0.73 -0.6 977,079 - Pf6N2E2_835 0.73 +0.6
Or see this region's nucleotide sequence