Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_820

Experiment: Rifampicin 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_818 and Pf6N2E2_819 overlap by 8 nucleotidesPf6N2E2_819 and Pf6N2E2_820 are separated by 267 nucleotidesPf6N2E2_820 and Pf6N2E2_821 overlap by 4 nucleotides Pf6N2E2_818 - Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY, at 951,775 to 953,055 _818 Pf6N2E2_819 - Response regulator, at 953,048 to 953,425 _819 Pf6N2E2_820 - Sensory box sensor histidine kinase/response regulator (EC 2.7.3.-), at 953,693 to 955,363 _820 Pf6N2E2_821 - KaiC, at 955,360 to 956,862 _821 Position (kb) 953 954 955 956Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 952.720 kb on + strand, within Pf6N2E2_818at 952.743 kb on + strand, within Pf6N2E2_818at 952.794 kb on + strand, within Pf6N2E2_818at 952.794 kb on + strand, within Pf6N2E2_818at 952.794 kb on + strand, within Pf6N2E2_818at 953.015 kb on + strandat 953.016 kb on - strandat 953.025 kb on + strandat 953.025 kb on + strandat 953.073 kb on + strandat 953.073 kb on + strandat 953.073 kb on + strandat 953.073 kb on + strandat 953.073 kb on + strandat 953.074 kb on - strandat 953.120 kb on + strand, within Pf6N2E2_819at 953.148 kb on + strand, within Pf6N2E2_819at 953.148 kb on + strand, within Pf6N2E2_819at 953.149 kb on - strand, within Pf6N2E2_819at 953.312 kb on + strand, within Pf6N2E2_819at 953.423 kb on + strandat 953.485 kb on - strandat 953.519 kb on + strandat 953.520 kb on - strandat 953.633 kb on - strandat 953.633 kb on - strandat 953.809 kb on - strandat 954.101 kb on + strand, within Pf6N2E2_820at 954.101 kb on + strand, within Pf6N2E2_820at 954.102 kb on - strand, within Pf6N2E2_820at 954.204 kb on + strand, within Pf6N2E2_820at 954.205 kb on - strand, within Pf6N2E2_820at 954.330 kb on + strand, within Pf6N2E2_820at 954.330 kb on + strand, within Pf6N2E2_820at 954.331 kb on - strand, within Pf6N2E2_820at 954.331 kb on - strand, within Pf6N2E2_820at 954.331 kb on - strand, within Pf6N2E2_820at 954.354 kb on + strand, within Pf6N2E2_820at 954.847 kb on + strand, within Pf6N2E2_820at 954.958 kb on - strand, within Pf6N2E2_820at 955.401 kb on + strandat 955.401 kb on + strandat 955.401 kb on + strandat 955.402 kb on - strandat 955.402 kb on - strandat 955.403 kb on + strandat 955.403 kb on + strandat 955.403 kb on + strandat 955.403 kb on + strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.404 kb on - strandat 955.482 kb on - strandat 955.595 kb on + strand, within Pf6N2E2_821at 955.595 kb on + strand, within Pf6N2E2_821at 955.595 kb on + strand, within Pf6N2E2_821at 955.595 kb on + strand, within Pf6N2E2_821at 955.596 kb on - strand, within Pf6N2E2_821at 955.596 kb on - strand, within Pf6N2E2_821at 955.596 kb on - strand, within Pf6N2E2_821at 955.596 kb on - strand, within Pf6N2E2_821at 955.596 kb on - strand, within Pf6N2E2_821at 955.596 kb on - strand, within Pf6N2E2_821at 955.596 kb on - strand, within Pf6N2E2_821at 955.596 kb on - strand, within Pf6N2E2_821at 955.596 kb on - strand, within Pf6N2E2_821at 955.599 kb on + strand, within Pf6N2E2_821at 955.599 kb on + strand, within Pf6N2E2_821at 955.599 kb on + strand, within Pf6N2E2_821at 955.600 kb on - strand, within Pf6N2E2_821at 955.600 kb on - strand, within Pf6N2E2_821at 955.682 kb on + strand, within Pf6N2E2_821at 955.683 kb on - strand, within Pf6N2E2_821at 955.742 kb on + strand, within Pf6N2E2_821at 955.973 kb on - strand, within Pf6N2E2_821at 955.973 kb on - strand, within Pf6N2E2_821at 956.117 kb on + strand, within Pf6N2E2_821at 956.117 kb on + strand, within Pf6N2E2_821at 956.118 kb on - strand, within Pf6N2E2_821at 956.161 kb on + strand, within Pf6N2E2_821at 956.204 kb on + strand, within Pf6N2E2_821at 956.219 kb on + strand, within Pf6N2E2_821at 956.255 kb on + strand, within Pf6N2E2_821at 956.256 kb on - strand, within Pf6N2E2_821at 956.256 kb on - strand, within Pf6N2E2_821at 956.256 kb on - strand, within Pf6N2E2_821

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.003 mg/ml
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952,720 + Pf6N2E2_818 0.74 -2.1
952,743 + Pf6N2E2_818 0.76 -1.7
952,794 + Pf6N2E2_818 0.80 +0.1
952,794 + Pf6N2E2_818 0.80 +0.9
952,794 + Pf6N2E2_818 0.80 +1.5
953,015 + +5.7
953,016 - -1.7
953,025 + +4.4
953,025 + +2.1
953,073 + -0.1
953,073 + -1.0
953,073 + -1.0
953,073 + +0.5
953,073 + -1.5
953,074 - +0.6
953,120 + Pf6N2E2_819 0.19 -0.9
953,148 + Pf6N2E2_819 0.26 +0.4
953,148 + Pf6N2E2_819 0.26 -0.3
953,149 - Pf6N2E2_819 0.27 +0.1
953,312 + Pf6N2E2_819 0.70 -0.1
953,423 + -1.2
953,485 - -0.2
953,519 + -0.6
953,520 - +1.0
953,633 - +0.1
953,633 - -0.9
953,809 - -2.5
954,101 + Pf6N2E2_820 0.24 +0.6
954,101 + Pf6N2E2_820 0.24 -0.7
954,102 - Pf6N2E2_820 0.24 +1.4
954,204 + Pf6N2E2_820 0.31 -0.3
954,205 - Pf6N2E2_820 0.31 -2.0
954,330 + Pf6N2E2_820 0.38 -1.5
954,330 + Pf6N2E2_820 0.38 -0.4
954,331 - Pf6N2E2_820 0.38 +0.9
954,331 - Pf6N2E2_820 0.38 +0.5
954,331 - Pf6N2E2_820 0.38 -1.1
954,354 + Pf6N2E2_820 0.40 -0.6
954,847 + Pf6N2E2_820 0.69 +0.2
954,958 - Pf6N2E2_820 0.76 +0.2
955,401 + -1.9
955,401 + -0.6
955,401 + -0.6
955,402 - +0.2
955,402 - +0.0
955,403 + -1.5
955,403 + +0.1
955,403 + -0.1
955,403 + -0.3
955,404 - +0.7
955,404 - +0.7
955,404 - +0.5
955,404 - -0.9
955,404 - -1.5
955,404 - -0.3
955,404 - -0.5
955,404 - +0.7
955,404 - -2.2
955,404 - +0.1
955,404 - -0.7
955,404 - +1.3
955,404 - -0.4
955,482 - +1.7
955,595 + Pf6N2E2_821 0.16 +0.0
955,595 + Pf6N2E2_821 0.16 +0.6
955,595 + Pf6N2E2_821 0.16 +0.1
955,595 + Pf6N2E2_821 0.16 -0.1
955,596 - Pf6N2E2_821 0.16 -0.1
955,596 - Pf6N2E2_821 0.16 +1.7
955,596 - Pf6N2E2_821 0.16 +0.3
955,596 - Pf6N2E2_821 0.16 +0.0
955,596 - Pf6N2E2_821 0.16 +0.0
955,596 - Pf6N2E2_821 0.16 -0.7
955,596 - Pf6N2E2_821 0.16 +0.4
955,596 - Pf6N2E2_821 0.16 -0.9
955,596 - Pf6N2E2_821 0.16 +1.7
955,599 + Pf6N2E2_821 0.16 -1.9
955,599 + Pf6N2E2_821 0.16 +1.0
955,599 + Pf6N2E2_821 0.16 -0.0
955,600 - Pf6N2E2_821 0.16 -0.6
955,600 - Pf6N2E2_821 0.16 -0.3
955,682 + Pf6N2E2_821 0.21 +0.2
955,683 - Pf6N2E2_821 0.21 +0.3
955,742 + Pf6N2E2_821 0.25 -1.7
955,973 - Pf6N2E2_821 0.41 +0.8
955,973 - Pf6N2E2_821 0.41 -1.0
956,117 + Pf6N2E2_821 0.50 +0.0
956,117 + Pf6N2E2_821 0.50 -0.6
956,118 - Pf6N2E2_821 0.50 -1.0
956,161 + Pf6N2E2_821 0.53 +0.5
956,204 + Pf6N2E2_821 0.56 -0.8
956,219 + Pf6N2E2_821 0.57 +0.1
956,255 + Pf6N2E2_821 0.60 -1.3
956,256 - Pf6N2E2_821 0.60 +0.5
956,256 - Pf6N2E2_821 0.60 +2.2
956,256 - Pf6N2E2_821 0.60 +0.6

Or see this region's nucleotide sequence