Experiment: Rifampicin 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_748 and Pf6N2E2_749 are separated by 1 nucleotides Pf6N2E2_749 and Pf6N2E2_750 are separated by 365 nucleotides
Pf6N2E2_748 - Plant-induced nitrilase (EC 3.5.5.1), hydrolyses beta-cyano-L-alanine, at 858,082 to 859,005
_748
Pf6N2E2_749 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 859,007 to 859,477
_749
Pf6N2E2_750 - Transcriptional regulator, DeoR family, at 859,843 to 860,559
_750
Position (kb) 859
860 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 858.163 kb on + strand at 858.163 kb on + strand at 858.302 kb on - strand, within Pf6N2E2_748 at 858.419 kb on - strand, within Pf6N2E2_748 at 858.419 kb on - strand, within Pf6N2E2_748 at 858.419 kb on - strand, within Pf6N2E2_748 at 858.433 kb on + strand, within Pf6N2E2_748 at 858.433 kb on + strand, within Pf6N2E2_748 at 858.613 kb on + strand, within Pf6N2E2_748 at 858.614 kb on - strand, within Pf6N2E2_748 at 858.614 kb on - strand, within Pf6N2E2_748 at 858.833 kb on + strand, within Pf6N2E2_748 at 858.833 kb on + strand, within Pf6N2E2_748 at 858.910 kb on + strand, within Pf6N2E2_748 at 858.917 kb on - strand at 858.934 kb on + strand at 858.935 kb on - strand at 858.935 kb on - strand at 859.104 kb on + strand, within Pf6N2E2_749 at 859.104 kb on + strand, within Pf6N2E2_749 at 859.104 kb on + strand, within Pf6N2E2_749 at 859.104 kb on + strand, within Pf6N2E2_749 at 859.104 kb on + strand, within Pf6N2E2_749 at 859.104 kb on + strand, within Pf6N2E2_749 at 859.104 kb on + strand, within Pf6N2E2_749 at 859.105 kb on - strand, within Pf6N2E2_749 at 859.105 kb on - strand, within Pf6N2E2_749 at 859.443 kb on - strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.755 kb on - strand at 859.755 kb on - strand at 859.755 kb on - strand at 859.755 kb on - strand at 859.755 kb on - strand at 859.755 kb on - strand at 859.755 kb on - strand at 859.755 kb on - strand at 859.807 kb on - strand at 859.807 kb on - strand at 859.851 kb on + strand at 860.017 kb on + strand, within Pf6N2E2_750 at 860.017 kb on + strand, within Pf6N2E2_750 at 860.017 kb on + strand, within Pf6N2E2_750 at 860.018 kb on - strand, within Pf6N2E2_750 at 860.018 kb on - strand, within Pf6N2E2_750 at 860.231 kb on - strand, within Pf6N2E2_750
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.003 mg/ml remove 858,163 + -0.7 858,163 + +0.4 858,302 - Pf6N2E2_748 0.24 -0.1 858,419 - Pf6N2E2_748 0.36 -0.1 858,419 - Pf6N2E2_748 0.36 -0.1 858,419 - Pf6N2E2_748 0.36 -1.6 858,433 + Pf6N2E2_748 0.38 +1.4 858,433 + Pf6N2E2_748 0.38 -1.6 858,613 + Pf6N2E2_748 0.57 +0.0 858,614 - Pf6N2E2_748 0.58 +0.5 858,614 - Pf6N2E2_748 0.58 +0.5 858,833 + Pf6N2E2_748 0.81 -0.9 858,833 + Pf6N2E2_748 0.81 +1.6 858,910 + Pf6N2E2_748 0.90 -0.5 858,917 - -0.2 858,934 + +0.4 858,935 - -1.6 858,935 - +0.9 859,104 + Pf6N2E2_749 0.21 -0.3 859,104 + Pf6N2E2_749 0.21 +0.3 859,104 + Pf6N2E2_749 0.21 -0.2 859,104 + Pf6N2E2_749 0.21 -0.2 859,104 + Pf6N2E2_749 0.21 +0.7 859,104 + Pf6N2E2_749 0.21 +0.0 859,104 + Pf6N2E2_749 0.21 +0.5 859,105 - Pf6N2E2_749 0.21 -0.2 859,105 - Pf6N2E2_749 0.21 -0.9 859,443 - +0.5 859,754 + -1.4 859,754 + -0.6 859,754 + -1.1 859,754 + +0.2 859,754 + -1.6 859,754 + -0.4 859,754 + +0.8 859,754 + -0.4 859,754 + -0.6 859,755 - -0.4 859,755 - -0.1 859,755 - -1.6 859,755 - +0.0 859,755 - +0.1 859,755 - -1.0 859,755 - -0.3 859,755 - +0.8 859,807 - +0.0 859,807 - -0.4 859,851 + -1.5 860,017 + Pf6N2E2_750 0.24 +0.3 860,017 + Pf6N2E2_750 0.24 -0.4 860,017 + Pf6N2E2_750 0.24 -3.1 860,018 - Pf6N2E2_750 0.24 -0.1 860,018 - Pf6N2E2_750 0.24 -1.2 860,231 - Pf6N2E2_750 0.54 +0.1
Or see this region's nucleotide sequence