Experiment: Rifampicin 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_672 and Pf6N2E2_673 overlap by 8 nucleotides Pf6N2E2_673 and Pf6N2E2_674 are separated by 12 nucleotides Pf6N2E2_674 and Pf6N2E2_675 overlap by 8 nucleotides
Pf6N2E2_672 - ABC-type polar amino acid transport system, ATPase component, at 777,295 to 778,017
_672
Pf6N2E2_673 - Probable permease of ABC transporter, at 778,010 to 778,660
_673
Pf6N2E2_674 - Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1), at 778,673 to 779,338
_674
Pf6N2E2_675 - 2-Methylcitrate dehydratase AcnD, at 779,331 to 781,106
_675
Position (kb) 778
779
780 Strain fitness (log2 ratio) -2
-1
0
1
2 at 778.078 kb on - strand, within Pf6N2E2_673 at 778.078 kb on - strand, within Pf6N2E2_673 at 778.081 kb on - strand, within Pf6N2E2_673 at 778.282 kb on - strand, within Pf6N2E2_673 at 778.282 kb on - strand, within Pf6N2E2_673 at 778.375 kb on - strand, within Pf6N2E2_673 at 778.623 kb on + strand at 778.624 kb on - strand at 778.651 kb on + strand at 778.651 kb on + strand at 778.652 kb on - strand at 778.740 kb on + strand, within Pf6N2E2_674 at 778.741 kb on - strand, within Pf6N2E2_674 at 778.741 kb on - strand, within Pf6N2E2_674 at 778.741 kb on - strand, within Pf6N2E2_674 at 778.741 kb on - strand, within Pf6N2E2_674 at 778.765 kb on - strand, within Pf6N2E2_674 at 778.765 kb on - strand, within Pf6N2E2_674 at 778.794 kb on + strand, within Pf6N2E2_674 at 778.795 kb on - strand, within Pf6N2E2_674 at 778.891 kb on - strand, within Pf6N2E2_674 at 778.891 kb on - strand, within Pf6N2E2_674 at 779.106 kb on + strand, within Pf6N2E2_674 at 779.107 kb on - strand, within Pf6N2E2_674 at 779.115 kb on + strand, within Pf6N2E2_674 at 779.115 kb on + strand, within Pf6N2E2_674 at 779.116 kb on - strand, within Pf6N2E2_674 at 779.116 kb on - strand, within Pf6N2E2_674 at 779.204 kb on + strand, within Pf6N2E2_674 at 779.228 kb on + strand, within Pf6N2E2_674 at 779.229 kb on - strand, within Pf6N2E2_674 at 779.328 kb on + strand at 779.329 kb on - strand at 779.329 kb on - strand at 779.471 kb on - strand at 779.471 kb on - strand at 779.480 kb on - strand at 779.480 kb on - strand at 779.480 kb on - strand at 779.606 kb on + strand, within Pf6N2E2_675 at 779.656 kb on + strand, within Pf6N2E2_675 at 779.656 kb on + strand, within Pf6N2E2_675 at 779.656 kb on + strand, within Pf6N2E2_675 at 779.656 kb on + strand, within Pf6N2E2_675 at 779.657 kb on - strand, within Pf6N2E2_675 at 779.739 kb on + strand, within Pf6N2E2_675 at 779.739 kb on + strand, within Pf6N2E2_675 at 779.739 kb on + strand, within Pf6N2E2_675 at 779.739 kb on + strand, within Pf6N2E2_675 at 779.740 kb on - strand, within Pf6N2E2_675 at 779.740 kb on - strand, within Pf6N2E2_675 at 779.740 kb on - strand, within Pf6N2E2_675 at 779.740 kb on - strand, within Pf6N2E2_675 at 779.740 kb on - strand, within Pf6N2E2_675 at 779.740 kb on - strand, within Pf6N2E2_675 at 779.973 kb on + strand, within Pf6N2E2_675 at 779.973 kb on + strand, within Pf6N2E2_675 at 779.973 kb on + strand, within Pf6N2E2_675 at 779.973 kb on + strand, within Pf6N2E2_675 at 779.974 kb on - strand, within Pf6N2E2_675 at 779.974 kb on - strand, within Pf6N2E2_675 at 780.197 kb on - strand, within Pf6N2E2_675 at 780.263 kb on - strand, within Pf6N2E2_675 at 780.304 kb on + strand, within Pf6N2E2_675 at 780.304 kb on + strand, within Pf6N2E2_675 at 780.304 kb on + strand, within Pf6N2E2_675 at 780.304 kb on + strand, within Pf6N2E2_675 at 780.304 kb on + strand, within Pf6N2E2_675 at 780.304 kb on + strand, within Pf6N2E2_675 at 780.305 kb on - strand, within Pf6N2E2_675
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.003 mg/ml remove 778,078 - Pf6N2E2_673 0.10 -0.3 778,078 - Pf6N2E2_673 0.10 +0.5 778,081 - Pf6N2E2_673 0.11 -1.1 778,282 - Pf6N2E2_673 0.42 -0.1 778,282 - Pf6N2E2_673 0.42 +0.4 778,375 - Pf6N2E2_673 0.56 -0.8 778,623 + -1.0 778,624 - -0.3 778,651 + +0.5 778,651 + +1.5 778,652 - +0.4 778,740 + Pf6N2E2_674 0.10 -0.8 778,741 - Pf6N2E2_674 0.10 -0.3 778,741 - Pf6N2E2_674 0.10 +1.2 778,741 - Pf6N2E2_674 0.10 -0.8 778,741 - Pf6N2E2_674 0.10 +0.7 778,765 - Pf6N2E2_674 0.14 -0.1 778,765 - Pf6N2E2_674 0.14 -1.5 778,794 + Pf6N2E2_674 0.18 -1.2 778,795 - Pf6N2E2_674 0.18 +0.2 778,891 - Pf6N2E2_674 0.33 -0.2 778,891 - Pf6N2E2_674 0.33 +0.3 779,106 + Pf6N2E2_674 0.65 -0.0 779,107 - Pf6N2E2_674 0.65 -0.6 779,115 + Pf6N2E2_674 0.66 -0.4 779,115 + Pf6N2E2_674 0.66 -0.7 779,116 - Pf6N2E2_674 0.67 -1.0 779,116 - Pf6N2E2_674 0.67 -1.3 779,204 + Pf6N2E2_674 0.80 -0.2 779,228 + Pf6N2E2_674 0.83 -1.4 779,229 - Pf6N2E2_674 0.83 +0.6 779,328 + -0.2 779,329 - -0.2 779,329 - -0.1 779,471 - +0.5 779,471 - +0.3 779,480 - +0.3 779,480 - -0.3 779,480 - -0.2 779,606 + Pf6N2E2_675 0.15 -1.0 779,656 + Pf6N2E2_675 0.18 +0.0 779,656 + Pf6N2E2_675 0.18 -0.5 779,656 + Pf6N2E2_675 0.18 -0.7 779,656 + Pf6N2E2_675 0.18 -0.4 779,657 - Pf6N2E2_675 0.18 +0.0 779,739 + Pf6N2E2_675 0.23 +0.8 779,739 + Pf6N2E2_675 0.23 +1.0 779,739 + Pf6N2E2_675 0.23 -0.7 779,739 + Pf6N2E2_675 0.23 +1.0 779,740 - Pf6N2E2_675 0.23 +0.2 779,740 - Pf6N2E2_675 0.23 -1.3 779,740 - Pf6N2E2_675 0.23 +0.3 779,740 - Pf6N2E2_675 0.23 +0.8 779,740 - Pf6N2E2_675 0.23 -0.9 779,740 - Pf6N2E2_675 0.23 -2.0 779,973 + Pf6N2E2_675 0.36 +0.3 779,973 + Pf6N2E2_675 0.36 +0.4 779,973 + Pf6N2E2_675 0.36 +1.0 779,973 + Pf6N2E2_675 0.36 +0.2 779,974 - Pf6N2E2_675 0.36 -1.5 779,974 - Pf6N2E2_675 0.36 +2.1 780,197 - Pf6N2E2_675 0.49 +0.3 780,263 - Pf6N2E2_675 0.52 +0.4 780,304 + Pf6N2E2_675 0.55 +0.2 780,304 + Pf6N2E2_675 0.55 +0.3 780,304 + Pf6N2E2_675 0.55 -0.6 780,304 + Pf6N2E2_675 0.55 -1.6 780,304 + Pf6N2E2_675 0.55 -1.7 780,304 + Pf6N2E2_675 0.55 -0.1 780,305 - Pf6N2E2_675 0.55 +0.3
Or see this region's nucleotide sequence