Experiment: Rifampicin 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_524 and Pf6N2E2_525 are separated by 327 nucleotides Pf6N2E2_525 and Pf6N2E2_526 are separated by 171 nucleotides Pf6N2E2_526 and Pf6N2E2_527 are separated by 214 nucleotides Pf6N2E2_527 and Pf6N2E2_528 are separated by 87 nucleotides
Pf6N2E2_524 - Inositol transport system permease protein, at 593,646 to 594,668
_524
Pf6N2E2_525 - C4-type zinc finger protein, DksA/TraR family, at 594,996 to 595,400
_525
Pf6N2E2_526 - Methyl-accepting chemotaxis protein, at 595,572 to 597,185
_526
Pf6N2E2_527 - hypothetical protein, at 597,400 to 597,636
_527
Pf6N2E2_528 - FIG00961088: hypothetical protein, at 597,724 to 597,954
_528
Position (kb) 595
596
597
598 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 594.582 kb on + strand at 594.582 kb on + strand at 594.582 kb on + strand at 594.583 kb on - strand at 594.583 kb on - strand at 594.583 kb on - strand at 594.730 kb on + strand at 594.730 kb on + strand at 594.731 kb on - strand at 594.731 kb on - strand at 594.731 kb on - strand at 594.731 kb on - strand at 594.731 kb on - strand at 594.731 kb on - strand at 594.733 kb on + strand at 594.734 kb on - strand at 594.734 kb on - strand at 594.734 kb on - strand at 594.734 kb on - strand at 594.740 kb on - strand at 594.740 kb on - strand at 594.740 kb on - strand at 594.740 kb on - strand at 594.740 kb on - strand at 594.740 kb on - strand at 594.740 kb on - strand at 594.740 kb on - strand at 594.760 kb on - strand at 594.760 kb on - strand at 594.761 kb on + strand at 594.762 kb on - strand at 594.762 kb on - strand at 594.909 kb on - strand at 594.991 kb on + strand at 594.991 kb on + strand at 595.035 kb on + strand at 595.035 kb on + strand at 595.035 kb on + strand at 595.035 kb on + strand at 595.035 kb on + strand at 595.035 kb on + strand at 595.187 kb on + strand, within Pf6N2E2_525 at 595.187 kb on + strand, within Pf6N2E2_525 at 595.256 kb on + strand, within Pf6N2E2_525 at 595.341 kb on + strand, within Pf6N2E2_525 at 595.341 kb on + strand, within Pf6N2E2_525 at 595.341 kb on + strand, within Pf6N2E2_525 at 595.341 kb on + strand, within Pf6N2E2_525 at 595.341 kb on + strand, within Pf6N2E2_525 at 595.341 kb on + strand, within Pf6N2E2_525 at 595.342 kb on - strand, within Pf6N2E2_525 at 595.342 kb on - strand, within Pf6N2E2_525 at 595.342 kb on - strand, within Pf6N2E2_525 at 595.471 kb on + strand at 595.471 kb on + strand at 595.471 kb on + strand at 595.471 kb on + strand at 595.471 kb on + strand at 595.471 kb on + strand at 595.471 kb on + strand at 595.471 kb on + strand at 595.471 kb on + strand at 595.472 kb on - strand at 595.472 kb on - strand at 595.472 kb on - strand at 595.472 kb on - strand at 595.472 kb on - strand at 595.472 kb on - strand at 595.472 kb on - strand at 595.477 kb on + strand at 595.477 kb on + strand at 595.477 kb on + strand at 595.478 kb on - strand at 595.478 kb on - strand at 595.478 kb on - strand at 595.478 kb on - strand at 595.478 kb on - strand at 595.478 kb on - strand at 595.478 kb on - strand at 595.523 kb on - strand at 595.534 kb on - strand at 595.555 kb on - strand at 595.725 kb on + strand at 595.842 kb on + strand, within Pf6N2E2_526 at 595.843 kb on - strand, within Pf6N2E2_526 at 595.856 kb on + strand, within Pf6N2E2_526 at 595.856 kb on + strand, within Pf6N2E2_526 at 595.856 kb on + strand, within Pf6N2E2_526 at 595.857 kb on - strand, within Pf6N2E2_526 at 595.857 kb on - strand, within Pf6N2E2_526 at 596.685 kb on + strand, within Pf6N2E2_526 at 596.686 kb on - strand, within Pf6N2E2_526 at 596.686 kb on - strand, within Pf6N2E2_526 at 596.686 kb on - strand, within Pf6N2E2_526 at 596.686 kb on - strand, within Pf6N2E2_526 at 596.686 kb on - strand, within Pf6N2E2_526 at 596.780 kb on + strand at 596.781 kb on - strand, within Pf6N2E2_526 at 596.781 kb on - strand, within Pf6N2E2_526 at 596.784 kb on + strand, within Pf6N2E2_526 at 596.785 kb on - strand, within Pf6N2E2_526 at 596.785 kb on - strand, within Pf6N2E2_526 at 596.818 kb on - strand, within Pf6N2E2_526 at 596.840 kb on + strand, within Pf6N2E2_526 at 596.928 kb on + strand, within Pf6N2E2_526 at 597.075 kb on + strand at 597.075 kb on + strand at 597.075 kb on + strand at 597.075 kb on + strand at 597.076 kb on - strand at 597.162 kb on + strand at 597.162 kb on + strand at 597.342 kb on - strand at 597.342 kb on - strand at 597.342 kb on - strand at 597.342 kb on - strand at 597.342 kb on - strand at 597.345 kb on + strand at 597.345 kb on + strand at 597.345 kb on + strand at 597.346 kb on - strand at 597.346 kb on - strand at 597.346 kb on - strand at 597.346 kb on - strand at 597.349 kb on + strand at 597.350 kb on - strand at 597.350 kb on - strand at 597.365 kb on + strand at 597.366 kb on - strand at 597.401 kb on + strand at 597.402 kb on - strand at 597.402 kb on - strand at 597.405 kb on + strand at 597.405 kb on + strand at 597.406 kb on - strand at 597.406 kb on - strand at 597.688 kb on - strand at 597.688 kb on - strand at 598.058 kb on + strand at 598.058 kb on + strand at 598.058 kb on + strand at 598.058 kb on + strand at 598.059 kb on - strand at 598.059 kb on - strand at 598.059 kb on - strand at 598.059 kb on - strand at 598.059 kb on - strand at 598.059 kb on - strand at 598.077 kb on + strand at 598.077 kb on + strand at 598.077 kb on + strand at 598.128 kb on + strand at 598.150 kb on + strand at 598.151 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.003 mg/ml remove 594,582 + -0.1 594,582 + -0.5 594,582 + -0.8 594,583 - -0.6 594,583 - +0.2 594,583 - -0.8 594,730 + -0.4 594,730 + +0.6 594,731 - -0.7 594,731 - -0.2 594,731 - +0.9 594,731 - +0.4 594,731 - +0.1 594,731 - -0.9 594,733 + +1.0 594,734 - +0.9 594,734 - +0.1 594,734 - -0.5 594,734 - +3.9 594,740 - +0.8 594,740 - +0.7 594,740 - +0.7 594,740 - +0.1 594,740 - +0.4 594,740 - -0.4 594,740 - -0.5 594,740 - +1.1 594,760 - -0.2 594,760 - +1.5 594,761 + +0.3 594,762 - +0.2 594,762 - +0.1 594,909 - -0.3 594,991 + +0.7 594,991 + +0.9 595,035 + -0.1 595,035 + +1.6 595,035 + +0.7 595,035 + +0.3 595,035 + -0.0 595,035 + +0.4 595,187 + Pf6N2E2_525 0.47 +1.0 595,187 + Pf6N2E2_525 0.47 +2.0 595,256 + Pf6N2E2_525 0.64 +1.5 595,341 + Pf6N2E2_525 0.85 +0.4 595,341 + Pf6N2E2_525 0.85 +0.3 595,341 + Pf6N2E2_525 0.85 +0.7 595,341 + Pf6N2E2_525 0.85 +0.0 595,341 + Pf6N2E2_525 0.85 +0.9 595,341 + Pf6N2E2_525 0.85 -0.9 595,342 - Pf6N2E2_525 0.85 +1.8 595,342 - Pf6N2E2_525 0.85 +0.8 595,342 - Pf6N2E2_525 0.85 +2.2 595,471 + +0.2 595,471 + +0.3 595,471 + +0.0 595,471 + -0.6 595,471 + -0.3 595,471 + +1.7 595,471 + +0.4 595,471 + -0.2 595,471 + +1.3 595,472 - +1.4 595,472 - +0.3 595,472 - -1.7 595,472 - +0.9 595,472 - +0.6 595,472 - +0.8 595,472 - -0.2 595,477 + -0.3 595,477 + +0.3 595,477 + +0.4 595,478 - -0.5 595,478 - -0.9 595,478 - +0.3 595,478 - -0.4 595,478 - -0.5 595,478 - -2.1 595,478 - +0.8 595,523 - +1.5 595,534 - +1.8 595,555 - +0.4 595,725 + +0.6 595,842 + Pf6N2E2_526 0.17 -0.1 595,843 - Pf6N2E2_526 0.17 -1.1 595,856 + Pf6N2E2_526 0.18 -0.4 595,856 + Pf6N2E2_526 0.18 -1.3 595,856 + Pf6N2E2_526 0.18 -0.1 595,857 - Pf6N2E2_526 0.18 -0.8 595,857 - Pf6N2E2_526 0.18 -1.2 596,685 + Pf6N2E2_526 0.69 -0.5 596,686 - Pf6N2E2_526 0.69 -0.6 596,686 - Pf6N2E2_526 0.69 +1.0 596,686 - Pf6N2E2_526 0.69 +1.0 596,686 - Pf6N2E2_526 0.69 +0.2 596,686 - Pf6N2E2_526 0.69 -0.4 596,780 + +2.3 596,781 - Pf6N2E2_526 0.75 -1.5 596,781 - Pf6N2E2_526 0.75 -0.8 596,784 + Pf6N2E2_526 0.75 -0.7 596,785 - Pf6N2E2_526 0.75 +0.5 596,785 - Pf6N2E2_526 0.75 -1.1 596,818 - Pf6N2E2_526 0.77 +0.4 596,840 + Pf6N2E2_526 0.79 -0.9 596,928 + Pf6N2E2_526 0.84 +0.0 597,075 + +0.5 597,075 + +0.3 597,075 + +0.1 597,075 + -0.0 597,076 - -0.1 597,162 + -0.9 597,162 + -0.1 597,342 - -0.2 597,342 - +1.0 597,342 - +0.6 597,342 - +0.3 597,342 - +0.8 597,345 + +0.1 597,345 + +0.2 597,345 + -0.3 597,346 - -0.1 597,346 - -0.7 597,346 - -1.2 597,346 - +0.2 597,349 + -1.6 597,350 - -0.4 597,350 - -0.1 597,365 + -1.0 597,366 - -0.3 597,401 + -0.1 597,402 - -0.9 597,402 - -1.7 597,405 + +0.0 597,405 + -0.6 597,406 - -0.3 597,406 - +0.3 597,688 - +0.1 597,688 - -2.1 598,058 + +0.1 598,058 + +0.6 598,058 + +0.2 598,058 + +0.1 598,059 - +0.7 598,059 - +0.3 598,059 - -2.2 598,059 - -2.2 598,059 - +1.1 598,059 - +0.6 598,077 + +0.6 598,077 + +0.9 598,077 + +0.3 598,128 + -1.2 598,150 + +1.3 598,151 - -1.9
Or see this region's nucleotide sequence