Experiment: Rifampicin 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_493 and Pf6N2E2_494 are separated by 149 nucleotides Pf6N2E2_494 and Pf6N2E2_495 are separated by 29 nucleotides
Pf6N2E2_493 - YD repeat protein, at 559,785 to 560,831
_493
Pf6N2E2_494 - Transcriptional regulator RutR of pyrimidine catabolism (TetR family), at 560,981 to 561,418
_494
Pf6N2E2_495 - YD repeat protein, at 561,448 to 562,563
_495
Position (kb) 560
561
562 Strain fitness (log2 ratio) -2
-1
0
1
2 at 560.132 kb on + strand, within Pf6N2E2_493 at 560.452 kb on + strand, within Pf6N2E2_493 at 560.452 kb on + strand, within Pf6N2E2_493 at 560.701 kb on - strand, within Pf6N2E2_493 at 560.701 kb on - strand, within Pf6N2E2_493 at 560.701 kb on - strand, within Pf6N2E2_493 at 560.701 kb on - strand, within Pf6N2E2_493 at 560.729 kb on - strand at 560.729 kb on - strand at 560.729 kb on - strand at 560.894 kb on - strand at 560.896 kb on + strand at 560.908 kb on + strand at 560.909 kb on - strand at 560.909 kb on - strand at 560.927 kb on - strand at 560.946 kb on + strand at 560.946 kb on + strand at 560.947 kb on - strand at 560.947 kb on - strand at 560.947 kb on - strand at 560.947 kb on - strand at 560.947 kb on - strand at 560.949 kb on + strand at 560.949 kb on + strand at 560.949 kb on + strand at 560.950 kb on - strand at 560.950 kb on - strand at 560.971 kb on + strand at 560.972 kb on - strand at 560.972 kb on - strand at 560.972 kb on - strand at 560.972 kb on - strand at 560.973 kb on + strand at 560.973 kb on + strand at 561.065 kb on + strand, within Pf6N2E2_494 at 561.134 kb on - strand, within Pf6N2E2_494 at 561.134 kb on - strand, within Pf6N2E2_494 at 561.134 kb on - strand, within Pf6N2E2_494 at 561.180 kb on - strand, within Pf6N2E2_494 at 561.453 kb on - strand at 561.573 kb on + strand, within Pf6N2E2_495 at 561.637 kb on + strand, within Pf6N2E2_495 at 561.834 kb on + strand, within Pf6N2E2_495 at 562.001 kb on + strand, within Pf6N2E2_495 at 562.085 kb on + strand, within Pf6N2E2_495 at 562.184 kb on + strand, within Pf6N2E2_495 at 562.184 kb on + strand, within Pf6N2E2_495
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.003 mg/ml remove 560,132 + Pf6N2E2_493 0.33 +1.0 560,452 + Pf6N2E2_493 0.64 +0.2 560,452 + Pf6N2E2_493 0.64 -0.1 560,701 - Pf6N2E2_493 0.87 +0.8 560,701 - Pf6N2E2_493 0.87 +1.3 560,701 - Pf6N2E2_493 0.87 -0.4 560,701 - Pf6N2E2_493 0.87 +0.1 560,729 - +0.0 560,729 - +0.2 560,729 - +0.3 560,894 - +0.5 560,896 + +0.7 560,908 + -0.6 560,909 - -1.4 560,909 - +0.0 560,927 - +0.1 560,946 + -1.1 560,946 + -0.0 560,947 - -0.3 560,947 - -1.1 560,947 - +0.2 560,947 - +1.8 560,947 - -0.6 560,949 + -0.6 560,949 + -0.8 560,949 + +0.6 560,950 - +0.5 560,950 - -0.5 560,971 + +0.2 560,972 - +1.4 560,972 - +0.1 560,972 - +0.6 560,972 - -0.1 560,973 + +0.5 560,973 + -0.2 561,065 + Pf6N2E2_494 0.19 -0.3 561,134 - Pf6N2E2_494 0.35 -0.9 561,134 - Pf6N2E2_494 0.35 -1.3 561,134 - Pf6N2E2_494 0.35 +0.5 561,180 - Pf6N2E2_494 0.45 +0.3 561,453 - +0.1 561,573 + Pf6N2E2_495 0.11 +0.3 561,637 + Pf6N2E2_495 0.17 -0.1 561,834 + Pf6N2E2_495 0.35 +0.4 562,001 + Pf6N2E2_495 0.50 -1.4 562,085 + Pf6N2E2_495 0.57 -2.3 562,184 + Pf6N2E2_495 0.66 +0.6 562,184 + Pf6N2E2_495 0.66 -0.5
Or see this region's nucleotide sequence