Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_430

Experiment: Rifampicin 0.003 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_429 and Pf6N2E2_430 are separated by 185 nucleotidesPf6N2E2_430 and Pf6N2E2_431 are separated by 3 nucleotidesPf6N2E2_431 and Pf6N2E2_432 are separated by 1 nucleotides Pf6N2E2_429 - Hypothetical protein PA2244 (similar to DNA topoisomerase IB, but possibly involved in glycosyl-transfer), at 496,450 to 497,505 _429 Pf6N2E2_430 - Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1), at 497,691 to 498,770 _430 Pf6N2E2_431 - Molybdenum transport system permease protein ModB (TC 3.A.1.8.1), at 498,774 to 499,454 _431 Pf6N2E2_432 - Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1), at 499,456 to 500,208 _432 Position (kb) 497 498 499Strain fitness (log2 ratio) -2 -1 0 1 2 3at 497.027 kb on + strand, within Pf6N2E2_429at 497.027 kb on + strand, within Pf6N2E2_429at 497.028 kb on - strand, within Pf6N2E2_429at 497.028 kb on - strand, within Pf6N2E2_429at 497.201 kb on + strand, within Pf6N2E2_429at 497.202 kb on - strand, within Pf6N2E2_429at 497.202 kb on - strand, within Pf6N2E2_429at 497.202 kb on - strand, within Pf6N2E2_429at 497.202 kb on - strand, within Pf6N2E2_429at 497.202 kb on - strand, within Pf6N2E2_429at 497.247 kb on - strand, within Pf6N2E2_429at 497.322 kb on + strand, within Pf6N2E2_429at 497.324 kb on + strand, within Pf6N2E2_429at 497.324 kb on + strand, within Pf6N2E2_429at 497.324 kb on + strand, within Pf6N2E2_429at 497.341 kb on + strand, within Pf6N2E2_429at 497.403 kb on - strandat 497.459 kb on + strandat 497.460 kb on - strandat 497.460 kb on - strandat 497.693 kb on - strandat 497.693 kb on - strandat 497.982 kb on + strand, within Pf6N2E2_430at 497.982 kb on + strand, within Pf6N2E2_430at 497.983 kb on - strand, within Pf6N2E2_430at 498.025 kb on + strand, within Pf6N2E2_430at 498.025 kb on + strand, within Pf6N2E2_430at 498.026 kb on - strand, within Pf6N2E2_430at 498.208 kb on + strand, within Pf6N2E2_430at 498.208 kb on + strandat 498.208 kb on + strand, within Pf6N2E2_430at 498.208 kb on + strand, within Pf6N2E2_430at 498.208 kb on + strand, within Pf6N2E2_430at 498.208 kb on + strand, within Pf6N2E2_430at 498.208 kb on + strand, within Pf6N2E2_430at 498.209 kb on - strand, within Pf6N2E2_430at 498.209 kb on - strand, within Pf6N2E2_430at 498.209 kb on - strand, within Pf6N2E2_430at 498.209 kb on - strand, within Pf6N2E2_430at 498.209 kb on - strand, within Pf6N2E2_430at 498.209 kb on - strand, within Pf6N2E2_430at 498.250 kb on + strand, within Pf6N2E2_430at 498.532 kb on + strand, within Pf6N2E2_430at 498.533 kb on - strand, within Pf6N2E2_430at 498.533 kb on - strand, within Pf6N2E2_430at 498.609 kb on - strand, within Pf6N2E2_430at 498.662 kb on + strand, within Pf6N2E2_430at 498.683 kb on - strandat 498.809 kb on - strandat 498.875 kb on - strand, within Pf6N2E2_431at 498.899 kb on - strand, within Pf6N2E2_431at 498.899 kb on - strand, within Pf6N2E2_431at 498.899 kb on - strand, within Pf6N2E2_431at 499.150 kb on + strand, within Pf6N2E2_431at 499.150 kb on + strand, within Pf6N2E2_431at 499.151 kb on - strand, within Pf6N2E2_431at 499.151 kb on - strand, within Pf6N2E2_431at 499.151 kb on - strand, within Pf6N2E2_431at 499.151 kb on - strand, within Pf6N2E2_431at 499.151 kb on - strand, within Pf6N2E2_431at 499.151 kb on - strand, within Pf6N2E2_431at 499.261 kb on + strand, within Pf6N2E2_431at 499.262 kb on - strand, within Pf6N2E2_431at 499.262 kb on - strand, within Pf6N2E2_431at 499.262 kb on - strand, within Pf6N2E2_431at 499.353 kb on + strand, within Pf6N2E2_431at 499.354 kb on - strand, within Pf6N2E2_431at 499.432 kb on + strandat 499.433 kb on - strandat 499.457 kb on + strandat 499.511 kb on + strandat 499.511 kb on + strandat 499.512 kb on - strandat 499.640 kb on + strand, within Pf6N2E2_432at 499.640 kb on + strand, within Pf6N2E2_432at 499.640 kb on + strand, within Pf6N2E2_432

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.003 mg/ml
remove
497,027 + Pf6N2E2_429 0.55 -0.1
497,027 + Pf6N2E2_429 0.55 -0.2
497,028 - Pf6N2E2_429 0.55 -0.3
497,028 - Pf6N2E2_429 0.55 -0.0
497,201 + Pf6N2E2_429 0.71 +0.2
497,202 - Pf6N2E2_429 0.71 +0.5
497,202 - Pf6N2E2_429 0.71 +0.5
497,202 - Pf6N2E2_429 0.71 +0.0
497,202 - Pf6N2E2_429 0.71 -1.1
497,202 - Pf6N2E2_429 0.71 +0.9
497,247 - Pf6N2E2_429 0.75 -0.8
497,322 + Pf6N2E2_429 0.83 -0.5
497,324 + Pf6N2E2_429 0.83 +1.6
497,324 + Pf6N2E2_429 0.83 +0.9
497,324 + Pf6N2E2_429 0.83 -1.6
497,341 + Pf6N2E2_429 0.84 +0.7
497,403 - -0.2
497,459 + -0.5
497,460 - +0.5
497,460 - +0.8
497,693 - -0.7
497,693 - -0.1
497,982 + Pf6N2E2_430 0.27 +0.5
497,982 + Pf6N2E2_430 0.27 -0.4
497,983 - Pf6N2E2_430 0.27 +1.0
498,025 + Pf6N2E2_430 0.31 +0.9
498,025 + Pf6N2E2_430 0.31 +0.6
498,026 - Pf6N2E2_430 0.31 +1.3
498,208 + Pf6N2E2_430 0.48 -1.4
498,208 + +0.8
498,208 + Pf6N2E2_430 0.48 -1.1
498,208 + Pf6N2E2_430 0.48 +0.4
498,208 + Pf6N2E2_430 0.48 +1.2
498,208 + Pf6N2E2_430 0.48 +1.2
498,208 + Pf6N2E2_430 0.48 +2.9
498,209 - Pf6N2E2_430 0.48 -0.2
498,209 - Pf6N2E2_430 0.48 +0.4
498,209 - Pf6N2E2_430 0.48 +2.3
498,209 - Pf6N2E2_430 0.48 +0.3
498,209 - Pf6N2E2_430 0.48 +0.2
498,209 - Pf6N2E2_430 0.48 +0.7
498,250 + Pf6N2E2_430 0.52 +0.4
498,532 + Pf6N2E2_430 0.78 +0.6
498,533 - Pf6N2E2_430 0.78 +0.8
498,533 - Pf6N2E2_430 0.78 -0.4
498,609 - Pf6N2E2_430 0.85 +0.2
498,662 + Pf6N2E2_430 0.90 +0.9
498,683 - -0.2
498,809 - -2.5
498,875 - Pf6N2E2_431 0.15 -0.1
498,899 - Pf6N2E2_431 0.18 +1.2
498,899 - Pf6N2E2_431 0.18 +0.6
498,899 - Pf6N2E2_431 0.18 +0.0
499,150 + Pf6N2E2_431 0.55 -0.4
499,150 + Pf6N2E2_431 0.55 +0.9
499,151 - Pf6N2E2_431 0.55 -2.0
499,151 - Pf6N2E2_431 0.55 -0.1
499,151 - Pf6N2E2_431 0.55 +0.3
499,151 - Pf6N2E2_431 0.55 +0.5
499,151 - Pf6N2E2_431 0.55 -0.6
499,151 - Pf6N2E2_431 0.55 +0.9
499,261 + Pf6N2E2_431 0.72 -0.5
499,262 - Pf6N2E2_431 0.72 -0.8
499,262 - Pf6N2E2_431 0.72 -0.2
499,262 - Pf6N2E2_431 0.72 +0.4
499,353 + Pf6N2E2_431 0.85 +1.9
499,354 - Pf6N2E2_431 0.85 -1.4
499,432 + +0.6
499,433 - -0.7
499,457 + +0.6
499,511 + -1.5
499,511 + +0.8
499,512 - +0.3
499,640 + Pf6N2E2_432 0.24 +0.7
499,640 + Pf6N2E2_432 0.24 +1.2
499,640 + Pf6N2E2_432 0.24 -0.3

Or see this region's nucleotide sequence