Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4147

Experiment: Rifampicin 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4145 and Pf6N2E2_4146 overlap by 4 nucleotidesPf6N2E2_4146 and Pf6N2E2_4147 are separated by 4 nucleotidesPf6N2E2_4147 and Pf6N2E2_4148 are separated by 113 nucleotides Pf6N2E2_4145 - ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C, at 4,825,205 to 4,826,143 _4145 Pf6N2E2_4146 - Membrane lipoprotein lipid attachment site containing protein USSDB6D, at 4,826,140 to 4,826,772 _4146 Pf6N2E2_4147 - Fused spore maturation proteins A and B, at 4,826,777 to 4,828,006 _4147 Pf6N2E2_4148 - Glutamate-aspartate carrier protein, at 4,828,120 to 4,829,451 _4148 Position (kb) 4826 4827 4828 4829Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4825.999 kb on + strand, within Pf6N2E2_4145at 4826.103 kb on - strandat 4826.160 kb on + strandat 4826.170 kb on - strandat 4826.177 kb on + strandat 4826.242 kb on + strand, within Pf6N2E2_4146at 4826.242 kb on + strand, within Pf6N2E2_4146at 4826.383 kb on + strand, within Pf6N2E2_4146at 4826.756 kb on + strandat 4826.793 kb on + strandat 4826.793 kb on + strandat 4826.889 kb on + strandat 4826.889 kb on + strandat 4826.889 kb on + strandat 4826.889 kb on + strandat 4826.889 kb on + strandat 4826.889 kb on + strandat 4826.890 kb on - strandat 4826.904 kb on + strand, within Pf6N2E2_4147at 4826.904 kb on + strand, within Pf6N2E2_4147at 4826.904 kb on + strand, within Pf6N2E2_4147at 4826.905 kb on - strand, within Pf6N2E2_4147at 4826.905 kb on - strand, within Pf6N2E2_4147at 4826.905 kb on - strand, within Pf6N2E2_4147at 4827.080 kb on + strand, within Pf6N2E2_4147at 4827.080 kb on + strand, within Pf6N2E2_4147at 4827.080 kb on + strand, within Pf6N2E2_4147at 4827.081 kb on - strand, within Pf6N2E2_4147at 4827.081 kb on - strand, within Pf6N2E2_4147at 4827.081 kb on - strand, within Pf6N2E2_4147at 4827.081 kb on - strand, within Pf6N2E2_4147at 4827.225 kb on + strand, within Pf6N2E2_4147at 4827.225 kb on + strand, within Pf6N2E2_4147at 4827.225 kb on + strand, within Pf6N2E2_4147at 4827.225 kb on + strand, within Pf6N2E2_4147at 4827.226 kb on - strand, within Pf6N2E2_4147at 4827.387 kb on + strand, within Pf6N2E2_4147at 4827.387 kb on + strand, within Pf6N2E2_4147at 4827.388 kb on - strand, within Pf6N2E2_4147at 4827.388 kb on - strand, within Pf6N2E2_4147at 4827.528 kb on + strand, within Pf6N2E2_4147at 4827.528 kb on + strand, within Pf6N2E2_4147at 4827.529 kb on - strand, within Pf6N2E2_4147at 4827.529 kb on - strand, within Pf6N2E2_4147at 4827.529 kb on - strand, within Pf6N2E2_4147at 4827.529 kb on - strand, within Pf6N2E2_4147at 4828.011 kb on + strandat 4828.011 kb on + strandat 4828.011 kb on + strandat 4828.011 kb on + strandat 4828.011 kb on + strandat 4828.012 kb on - strandat 4828.012 kb on - strandat 4828.012 kb on - strandat 4828.012 kb on - strandat 4828.012 kb on - strandat 4828.012 kb on - strandat 4828.083 kb on + strandat 4828.083 kb on + strandat 4828.083 kb on + strandat 4828.083 kb on + strandat 4828.084 kb on - strandat 4828.084 kb on - strandat 4828.086 kb on + strandat 4828.086 kb on + strandat 4828.086 kb on + strandat 4828.086 kb on + strandat 4828.086 kb on + strandat 4828.087 kb on - strandat 4828.087 kb on - strandat 4828.087 kb on - strandat 4828.211 kb on + strandat 4828.211 kb on + strandat 4828.211 kb on + strandat 4828.211 kb on + strandat 4828.211 kb on + strandat 4828.211 kb on + strandat 4828.211 kb on + strandat 4828.211 kb on + strandat 4828.212 kb on - strandat 4828.212 kb on - strandat 4828.212 kb on - strandat 4828.212 kb on - strandat 4828.212 kb on - strandat 4828.212 kb on - strandat 4828.212 kb on - strandat 4828.463 kb on + strand, within Pf6N2E2_4148at 4828.631 kb on + strand, within Pf6N2E2_4148at 4828.742 kb on + strand, within Pf6N2E2_4148at 4828.742 kb on + strand, within Pf6N2E2_4148at 4828.743 kb on - strand, within Pf6N2E2_4148at 4828.839 kb on - strand, within Pf6N2E2_4148at 4828.951 kb on + strand, within Pf6N2E2_4148at 4828.952 kb on - strand, within Pf6N2E2_4148

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.003 mg/ml
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4,825,999 + Pf6N2E2_4145 0.85 -0.6
4,826,103 - -0.0
4,826,160 + -0.2
4,826,170 - +0.4
4,826,177 + -1.4
4,826,242 + Pf6N2E2_4146 0.16 +0.4
4,826,242 + Pf6N2E2_4146 0.16 +0.4
4,826,383 + Pf6N2E2_4146 0.38 +0.0
4,826,756 + +0.0
4,826,793 + -1.6
4,826,793 + -1.6
4,826,889 + -0.8
4,826,889 + -0.4
4,826,889 + -2.4
4,826,889 + -0.5
4,826,889 + -0.6
4,826,889 + -0.5
4,826,890 - -0.3
4,826,904 + Pf6N2E2_4147 0.10 -0.6
4,826,904 + Pf6N2E2_4147 0.10 -1.1
4,826,904 + Pf6N2E2_4147 0.10 -1.7
4,826,905 - Pf6N2E2_4147 0.10 -0.2
4,826,905 - Pf6N2E2_4147 0.10 +0.4
4,826,905 - Pf6N2E2_4147 0.10 -1.5
4,827,080 + Pf6N2E2_4147 0.25 -0.5
4,827,080 + Pf6N2E2_4147 0.25 -1.6
4,827,080 + Pf6N2E2_4147 0.25 -2.2
4,827,081 - Pf6N2E2_4147 0.25 -2.7
4,827,081 - Pf6N2E2_4147 0.25 -2.6
4,827,081 - Pf6N2E2_4147 0.25 -0.7
4,827,081 - Pf6N2E2_4147 0.25 -1.4
4,827,225 + Pf6N2E2_4147 0.36 -0.6
4,827,225 + Pf6N2E2_4147 0.36 -0.6
4,827,225 + Pf6N2E2_4147 0.36 -1.5
4,827,225 + Pf6N2E2_4147 0.36 -1.0
4,827,226 - Pf6N2E2_4147 0.37 -1.5
4,827,387 + Pf6N2E2_4147 0.50 -0.1
4,827,387 + Pf6N2E2_4147 0.50 -0.8
4,827,388 - Pf6N2E2_4147 0.50 -0.2
4,827,388 - Pf6N2E2_4147 0.50 -0.3
4,827,528 + Pf6N2E2_4147 0.61 -0.1
4,827,528 + Pf6N2E2_4147 0.61 -1.2
4,827,529 - Pf6N2E2_4147 0.61 -2.1
4,827,529 - Pf6N2E2_4147 0.61 -1.1
4,827,529 - Pf6N2E2_4147 0.61 -1.0
4,827,529 - Pf6N2E2_4147 0.61 -2.5
4,828,011 + +2.9
4,828,011 + -0.8
4,828,011 + -0.0
4,828,011 + +0.4
4,828,011 + +0.4
4,828,012 - +0.1
4,828,012 - +0.0
4,828,012 - -1.9
4,828,012 - -0.7
4,828,012 - -2.2
4,828,012 - -0.2
4,828,083 + +1.4
4,828,083 + -0.4
4,828,083 + +0.1
4,828,083 + +1.5
4,828,084 - -0.5
4,828,084 - -0.3
4,828,086 + +0.6
4,828,086 + +0.7
4,828,086 + -0.0
4,828,086 + +1.2
4,828,086 + -0.5
4,828,087 - +0.2
4,828,087 - +1.8
4,828,087 - -0.6
4,828,211 + +2.5
4,828,211 + +2.0
4,828,211 + +1.6
4,828,211 + +0.8
4,828,211 + +1.1
4,828,211 + +3.0
4,828,211 + +2.1
4,828,211 + +1.7
4,828,212 - +1.7
4,828,212 - +1.4
4,828,212 - +2.1
4,828,212 - +2.8
4,828,212 - +1.0
4,828,212 - +1.6
4,828,212 - +1.2
4,828,463 + Pf6N2E2_4148 0.26 +2.4
4,828,631 + Pf6N2E2_4148 0.38 +1.8
4,828,742 + Pf6N2E2_4148 0.47 +0.4
4,828,742 + Pf6N2E2_4148 0.47 +2.1
4,828,743 - Pf6N2E2_4148 0.47 +1.1
4,828,839 - Pf6N2E2_4148 0.54 +1.8
4,828,951 + Pf6N2E2_4148 0.62 +2.4
4,828,952 - Pf6N2E2_4148 0.62 +2.7

Or see this region's nucleotide sequence