Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3998

Experiment: Rifampicin 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.003 mg/ml
4,667,335	+				-1.1
4,667,337	+				-0.2
4,667,337	+				+0.3
4,667,337	+				-0.6
4,667,337	+				-0.1
4,667,338	-				-0.2
4,667,724	-		Pf6N2E2_3997	0.46	+0.7
4,667,868	+		Pf6N2E2_3997	0.67	+0.8
4,667,868	+		Pf6N2E2_3997	0.67	+1.9
4,667,869	-		Pf6N2E2_3997	0.67	-0.3
4,667,936	+		Pf6N2E2_3997	0.77	+0.1
4,667,937	-		Pf6N2E2_3997	0.77	+0.7
4,667,937	-		Pf6N2E2_3997	0.77	-0.9
4,667,937	-		Pf6N2E2_3997	0.77	+0.4
4,668,019	-		Pf6N2E2_3997	0.89	-0.2
4,668,019	-		Pf6N2E2_3997	0.89	+1.1
4,668,019	-		Pf6N2E2_3997	0.89	+0.7
4,668,019	-		Pf6N2E2_3997	0.89	-0.4
4,668,019	-		Pf6N2E2_3997	0.89	+0.8
4,668,025	+				-0.2
4,668,025	+				-0.2
4,668,026	-				+1.0
4,668,026	-				+1.6
4,668,026	-				+0.3
4,668,047	+				+0.5
4,668,048	-				-2.2
4,668,048	-				+1.1
4,668,048	-				+1.2
4,668,212	+				+0.5
4,668,213	-				-1.4
4,668,221	+				+0.2
4,668,222	-				-0.5
4,668,374	+		Pf6N2E2_3998	0.37	-0.3
4,668,374	+		Pf6N2E2_3998	0.37	-1.2
4,668,374	+		Pf6N2E2_3998	0.37	-0.5
4,668,375	-		Pf6N2E2_3998	0.37	-1.5
4,668,375	-		Pf6N2E2_3998	0.37	-1.6
4,668,378	+		Pf6N2E2_3998	0.37	-0.5
4,668,378	+		Pf6N2E2_3998	0.37	+0.4
4,668,378	+		Pf6N2E2_3998	0.37	+0.4
4,668,379	-				+3.2
4,668,379	-		Pf6N2E2_3998	0.38	-0.4
4,668,533	+		Pf6N2E2_3998	0.67	-0.3
4,668,536	+		Pf6N2E2_3998	0.67	-0.2
4,668,536	+		Pf6N2E2_3998	0.67	-0.3
4,668,536	+		Pf6N2E2_3998	0.67	-0.6
4,668,536	+		Pf6N2E2_3998	0.67	-2.4
4,668,537	-		Pf6N2E2_3998	0.68	+0.2
4,668,537	-		Pf6N2E2_3998	0.68	-0.1
4,668,537	-		Pf6N2E2_3998	0.68	-0.5
4,668,537	-		Pf6N2E2_3998	0.68	+0.2
4,668,621	+		Pf6N2E2_3998	0.84	-0.8
4,668,769	-				-0.8
4,668,811	+				+0.3
4,668,978	+				+0.1
4,668,978	+				+0.9
4,668,979	-				-0.9
4,668,979	-				-0.2
4,668,979	-				-0.1
4,668,979	-				-0.7
4,668,979	-				+1.7
4,668,979	-				-0.6
4,668,979	-				+0.4
4,668,979	-				-0.1
4,669,049	+		Pf6N2E2_3999	0.13	+0.0
4,669,050	-		Pf6N2E2_3999	0.13	+1.3
4,669,284	+		Pf6N2E2_3999	0.23	-1.5
4,669,284	+		Pf6N2E2_3999	0.23	-0.5
4,669,284	+		Pf6N2E2_3999	0.23	-0.0
4,669,284	+		Pf6N2E2_3999	0.23	+0.8
4,669,285	-		Pf6N2E2_3999	0.23	-1.1
4,669,285	-		Pf6N2E2_3999	0.23	-0.1
4,669,285	-		Pf6N2E2_3999	0.23	+0.7
4,669,285	-		Pf6N2E2_3999	0.23	-0.0
4,669,285	-		Pf6N2E2_3999	0.23	-0.2
4,669,285	-		Pf6N2E2_3999	0.23	+1.2
4,669,285	-		Pf6N2E2_3999	0.23	+0.3
4,669,285	-		Pf6N2E2_3999	0.23	-0.9
4,669,285	-		Pf6N2E2_3999	0.23	+0.5
4,669,285	-		Pf6N2E2_3999	0.23	+1.0
4,669,285	-		Pf6N2E2_3999	0.23	+0.7
4,669,285	-		Pf6N2E2_3999	0.23	+0.5
4,669,285	-		Pf6N2E2_3999	0.23	+0.2
4,669,288	+		Pf6N2E2_3999	0.23	+0.9
4,669,288	+		Pf6N2E2_3999	0.23	+0.3
4,669,288	+		Pf6N2E2_3999	0.23	-0.3
4,669,289	-		Pf6N2E2_3999	0.23	+0.4
4,669,289	-		Pf6N2E2_3999	0.23	-0.1
4,669,327	-		Pf6N2E2_3999	0.25	-0.2
4,669,362	+		Pf6N2E2_3999	0.27	-0.6
4,669,363	-		Pf6N2E2_3999	0.27	-0.5
4,669,363	-		Pf6N2E2_3999	0.27	-0.3
4,669,363	-		Pf6N2E2_3999	0.27	+0.3
4,669,363	-		Pf6N2E2_3999	0.27	+0.3
4,669,363	-		Pf6N2E2_3999	0.27	+0.1
4,669,363	-		Pf6N2E2_3999	0.27	-0.0
4,669,363	-		Pf6N2E2_3999	0.27	+0.2
4,669,363	-		Pf6N2E2_3999	0.27	+0.4
4,669,377	+		Pf6N2E2_3999	0.27	+0.4
4,669,377	+		Pf6N2E2_3999	0.27	-0.9
4,669,378	-		Pf6N2E2_3999	0.27	+0.1
4,669,378	-		Pf6N2E2_3999	0.27	+0.4
4,669,399	+		Pf6N2E2_3999	0.28	-0.3
4,669,399	+		Pf6N2E2_3999	0.28	-0.2
4,669,399	+		Pf6N2E2_3999	0.28	-0.5
4,669,399	+		Pf6N2E2_3999	0.28	-1.3
4,669,400	-		Pf6N2E2_3999	0.28	+2.0
4,669,454	+		Pf6N2E2_3999	0.31	-0.0
4,669,455	-		Pf6N2E2_3999	0.31	+0.6
4,669,455	-		Pf6N2E2_3999	0.31	-0.1
4,669,455	-		Pf6N2E2_3999	0.31	-0.3
4,669,486	-		Pf6N2E2_3999	0.32	-2.1
4,669,563	+		Pf6N2E2_3999	0.36	+0.6
4,669,563	+		Pf6N2E2_3999	0.36	-2.0
4,669,563	+		Pf6N2E2_3999	0.36	+1.0
4,669,563	+		Pf6N2E2_3999	0.36	-0.6
4,669,563	+		Pf6N2E2_3999	0.36	-1.4
4,669,564	-		Pf6N2E2_3999	0.36	+0.4
4,669,564	-		Pf6N2E2_3999	0.36	-0.0
4,669,564	-		Pf6N2E2_3999	0.36	+0.9
4,669,564	-		Pf6N2E2_3999	0.36	-0.5
4,669,564	-		Pf6N2E2_3999	0.36	-0.5
4,669,564	-		Pf6N2E2_3999	0.36	+0.8
4,669,668	+		Pf6N2E2_3999	0.41	-0.6
4,669,668	+		Pf6N2E2_3999	0.41	+0.6