Experiment: Rifampicin 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3664 and Pf6N2E2_3665 are separated by 358 nucleotides Pf6N2E2_3665 and Pf6N2E2_3666 overlap by 1 nucleotides Pf6N2E2_3666 and Pf6N2E2_3667 overlap by 4 nucleotides
Pf6N2E2_3664 - Carbamoyltransferase in large core OS assembly cluster, at 4,265,287 to 4,267,035
_3664
Pf6N2E2_3665 - serine/threonine protein kinase, at 4,267,394 to 4,268,848
_3665
Pf6N2E2_3666 - InaA protein, at 4,268,848 to 4,269,600
_3666
Pf6N2E2_3667 - Heptose kinase WapQ, eukaryotic type, at 4,269,597 to 4,270,331
_3667
Position (kb)
4267
4268
4269 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 4266.720 kb on - strand, within Pf6N2E2_3664 at 4266.785 kb on + strand, within Pf6N2E2_3664 at 4266.786 kb on - strand, within Pf6N2E2_3664 at 4266.929 kb on - strand at 4266.975 kb on - strand at 4266.975 kb on - strand at 4266.975 kb on - strand at 4266.975 kb on - strand at 4266.975 kb on - strand at 4266.975 kb on - strand at 4266.975 kb on - strand at 4267.043 kb on + strand at 4267.044 kb on - strand at 4267.051 kb on + strand at 4267.052 kb on - strand at 4267.052 kb on - strand at 4267.052 kb on - strand at 4267.052 kb on - strand at 4267.052 kb on - strand at 4267.052 kb on - strand at 4267.052 kb on - strand at 4267.121 kb on - strand at 4267.121 kb on - strand at 4267.135 kb on + strand at 4267.135 kb on + strand at 4267.135 kb on + strand at 4267.141 kb on - strand at 4267.141 kb on - strand at 4267.153 kb on - strand at 4267.186 kb on + strand at 4267.186 kb on + strand at 4267.187 kb on - strand at 4267.193 kb on + strand at 4267.193 kb on + strand at 4267.242 kb on - strand at 4267.343 kb on + strand at 4267.344 kb on - strand at 4267.384 kb on - strand at 4267.395 kb on + strand at 4267.980 kb on - strand, within Pf6N2E2_3665 at 4269.303 kb on - strand, within Pf6N2E2_3666 at 4269.303 kb on - strand, within Pf6N2E2_3666 at 4269.414 kb on - strand, within Pf6N2E2_3666 at 4269.414 kb on - strand, within Pf6N2E2_3666 at 4269.414 kb on - strand, within Pf6N2E2_3666 at 4269.414 kb on - strand, within Pf6N2E2_3666 at 4269.435 kb on - strand, within Pf6N2E2_3666 at 4269.435 kb on - strand, within Pf6N2E2_3666 at 4269.719 kb on - strand, within Pf6N2E2_3667 at 4269.719 kb on - strand, within Pf6N2E2_3667
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.003 mg/ml remove 4,266,720 - Pf6N2E2_3664 0.82 +7.9 4,266,785 + Pf6N2E2_3664 0.86 +8.0 4,266,786 - Pf6N2E2_3664 0.86 +7.5 4,266,929 - +9.2 4,266,975 - +7.0 4,266,975 - +8.8 4,266,975 - +9.6 4,266,975 - +9.2 4,266,975 - +8.2 4,266,975 - +8.9 4,266,975 - +9.0 4,267,043 + +7.7 4,267,044 - +9.6 4,267,051 + +8.8 4,267,052 - +7.2 4,267,052 - +5.8 4,267,052 - +9.5 4,267,052 - +9.4 4,267,052 - +8.5 4,267,052 - +9.5 4,267,052 - +7.6 4,267,121 - -1.1 4,267,121 - -0.0 4,267,135 + +9.8 4,267,135 + +9.2 4,267,135 + +8.8 4,267,141 - +0.1 4,267,141 - +0.3 4,267,153 - +0.1 4,267,186 + +0.3 4,267,186 + +0.6 4,267,187 - -1.2 4,267,193 + -0.7 4,267,193 + +1.4 4,267,242 - -0.9 4,267,343 + +1.3 4,267,344 - +0.5 4,267,384 - +0.1 4,267,395 + +0.8 4,267,980 - Pf6N2E2_3665 0.40 -0.7 4,269,303 - Pf6N2E2_3666 0.60 -1.2 4,269,303 - Pf6N2E2_3666 0.60 -2.7 4,269,414 - Pf6N2E2_3666 0.75 -1.7 4,269,414 - Pf6N2E2_3666 0.75 +0.5 4,269,414 - Pf6N2E2_3666 0.75 -2.0 4,269,414 - Pf6N2E2_3666 0.75 -0.4 4,269,435 - Pf6N2E2_3666 0.78 -3.1 4,269,435 - Pf6N2E2_3666 0.78 -1.3 4,269,719 - Pf6N2E2_3667 0.17 +0.1 4,269,719 - Pf6N2E2_3667 0.17 -0.9
Or see this region's nucleotide sequence